| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1321 |
|---|
| Symbol | |
|---|
| ID | 4251341 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 1531231 |
|---|
| End bp | 1532340 |
|---|
| Gene Length | 1110 bp |
|---|
| Protein Length | 369 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638117906 |
|---|
| Product | DegT/DnrJ/EryC1/StrS aminotransferase |
|---|
| Protein accession | YP_733457 |
|---|
| Protein GI | 113969664 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0399] Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0344454 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGAATA AAACAATTCC TGTCACCCAG CCATTTTTGC CAGAATTAAG CGAATTTATG
CCTTATCTTG AACAAATTTG GGATAATCGC TGGCTGACCA ACAATGGCCC GTTTCATCAA
GAATTAGAAG CCAAGTTGGC TGAATATTTG GGTGTTGAGC ATGTCTCTTT ATTTAATAAT
GCCACTATTG CGCTCATCAC CGCCTTGCAG GCGATGCGCA TTCACGGCGA GGTGATTACC
ACTCCCTATT CGTTTGTGGC AACCAGCCAT TCGATCATGT GGAATGGCTT AGAGCCAGTG
TTTGTCGATA TTCATCCAAC CACTTTTAAT ATTGATCCTG CCAAGATAGA AGCAGCGATT
ACTCCACGCA CCACTGCCAT TATGCCGGTC CATTGCTACT CCAATCCGTG TGATGTTGAG
GCTATTCAAA AAATTGCCGA TAACTATGGC CTTAAGGTAA TTTATGATGC GGCTCATGCT
TTTGGGGTCA ATTATAAAGG TGAGAGTTTA CTTAAATGGG GTGACCTGTC GATTTTAAGC
TTTCACGCCA CCAAGGTATT TAATACCTTC GAAGGTGGAG CGATCATCAG CCCAGATGCC
AAAACCAAGC AACGTATTGA CCGCTTAAAA AACTTTGGTA TCGCCGATGA GCTAACAGTA
ACAGCGCCTG GCATTAACGG TAAAATGAGT GAAATTAATG CCGCCTTTGG TTTAGTGCAG
CTGAAACATA TTGATGATGC AATGGCGCAG CGCCAAGCCG TCGATTCGCG TTACCGCTGT
GAGCTTGCTG AGGTAACGGG CATTACCCTG TATCAGCATG ATATCAATGC TAATAGCAAC
TTCTCTTACT TCCCTATCTT AGTGGAGGCA GAATACCCTC TCAGCCGCGA TGAGCTATAC
GAAAAGCTAA AAGCTAATGG TATTTTATCG CGCCGTTATT TTTACCCGCT TATTAGCAAT
ATGCCTATGT ATCGGGGTTT ACCAACTGCC GATACTGTTC ATTTACCTCT GGCCAATGCA
TTGGCTGAAA AGGTATTGTG TTTGCCGATT TTCAATGAGC TAACTGTTGA ACAGCAGCAA
CAGGTTATTG CATTAATTAA AGGGAGTTAG
|
|---|
| Protein sequence | MTNKTIPVTQ PFLPELSEFM PYLEQIWDNR WLTNNGPFHQ ELEAKLAEYL GVEHVSLFNN
ATIALITALQ AMRIHGEVIT TPYSFVATSH SIMWNGLEPV FVDIHPTTFN IDPAKIEAAI
TPRTTAIMPV HCYSNPCDVE AIQKIADNYG LKVIYDAAHA FGVNYKGESL LKWGDLSILS
FHATKVFNTF EGGAIISPDA KTKQRIDRLK NFGIADELTV TAPGINGKMS EINAAFGLVQ
LKHIDDAMAQ RQAVDSRYRC ELAEVTGITL YQHDINANSN FSYFPILVEA EYPLSRDELY
EKLKANGILS RRYFYPLISN MPMYRGLPTA DTVHLPLANA LAEKVLCLPI FNELTVEQQQ
QVIALIKGS
|
|---|
| |