| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1164 |
|---|
| Symbol | |
|---|
| ID | 4251448 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 1370569 |
|---|
| End bp | 1371654 |
|---|
| Gene Length | 1086 bp |
|---|
| Protein Length | 361 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 638117745 |
|---|
| Product | MerR family transcriptional regulator |
|---|
| Protein accession | YP_733301 |
|---|
| Protein GI | 113969508 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0789] Predicted transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACAAC ATGATTCAAA GATTGAGGCC GAAAACCTCG AGAGTCGCGA GCTGCTCCCG
ATAGGGGAAG TGTCGCTACT CACAGGGGTT AACGCGGTAA CACTAAGAGC ATGGCAACGG
CGCTTTGGGC TGGTGATCCC TGCACGTACG CCTAAGGGCC ATAGGTTATA CACACCTGAA
AATATTCAAC AAATCCATGA GATCAATGCA TGGTTAGCCA AGGGGGTCGC CATCAGTAAG
GTCAAACCGT TACTGATGAG TTCAGCTCGT GCGACCGAGG ATGACCATAC TACACTGCAA
GAGGGGGATT TGTGGCAGGA GCAGATCACA GCTTTAAATA GTGCGCTGTT TGAACTGGAT
CAATCAAAGC TGCACCAAAT CCTTGATGAA GCCCTTGGCT TATATCCCTT TCAATTAGTG
AAACAAAAAT TGTTGCTGGC TTGGATGGCG CAGTTACCTG CTTTGCTTGA GCCTCGTTTA
GATGCCGAGC TGTTGCTTGC ATGGCTAGAA AGTGAGTTAG CCAGTCGCAT CGGAGGGCGC
GCCAGTTTTG CCGGGCAGGC CAGTTTGGCG CAAATCGGTG TCGTGTGTTT GCCATCTATC
CAAGGGCAAA AAACGGCAGA GCTGCACGCG GGTCATTCGA ACATGATTCA CTCGAGCGCA
AGCAACTCAA GCACAAGCAA CTCAAGCATA AGCAACTTGA GTATGACTAA TCGCTTGTAT
AGTCTGGTTT TACGCTTAGA GCTTGCCGAG TTAAGAGTGT CAGTCATTCA TCTTGGCGTA
CTCGACACCA CAAGTCTTGG GCTTATCAAT AATCGACTCA AGGTAGATGC ACTCTTGCTA
GTGCCTGAGG CGAATCATCC ACCATCGAAA ATCTTCGAGC TGCAAAGCTT GCTCGAGCAA
ATGCCACTTT CCTGTTATCT CATCGGCCCC TTTGCACTGA CTCTCACGGC CTTATCAGCG
TTTATGGCGC CAGACTTGGC TGAATGGGTT AGCCAAGTTT CGGCGGCAAA AGAGCAACAG
AAGAAACAGC TACGTAAGAA CAAAAACGCG GCCGAAGCGG AGCAAGGAGG GCAAGCCGAT
GAGTGA
|
|---|
| Protein sequence | MKQHDSKIEA ENLESRELLP IGEVSLLTGV NAVTLRAWQR RFGLVIPART PKGHRLYTPE
NIQQIHEINA WLAKGVAISK VKPLLMSSAR ATEDDHTTLQ EGDLWQEQIT ALNSALFELD
QSKLHQILDE ALGLYPFQLV KQKLLLAWMA QLPALLEPRL DAELLLAWLE SELASRIGGR
ASFAGQASLA QIGVVCLPSI QGQKTAELHA GHSNMIHSSA SNSSTSNSSI SNLSMTNRLY
SLVLRLELAE LRVSVIHLGV LDTTSLGLIN NRLKVDALLL VPEANHPPSK IFELQSLLEQ
MPLSCYLIGP FALTLTALSA FMAPDLAEWV SQVSAAKEQQ KKQLRKNKNA AEAEQGGQAD
E
|
|---|
| |