| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1130 |
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| Symbol | valS |
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| ID | 4251798 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 1328854 |
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| End bp | 1331730 |
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| Gene Length | 2877 bp |
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| Protein Length | 958 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638117711 |
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| Product | valyl-tRNA synthetase |
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| Protein accession | YP_733267 |
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| Protein GI | 113969474 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0525] Valyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00422] valyl-tRNA synthetase |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00231601 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAAAAA CATACGATCC TCAGTCCATT GAGCAGACTC TTTACCAAAA CTGGGAAGAG
CAAGGTTACT TTAAGCCCCA CGGCGATGCC TCACAGGGCA ACTATTGCAT CATGATCCCG
CCACCTAACG TGACGGGCAG CTTGCACATG GGCCACGCTT TCCAAGATAC CATCATGGAT
ACTCTGATCC GCTACCAACG TATGAAGGGT AAAAACACCC TGTGGCAAGT CGGTACTGAC
CATGCGGGTA TTGCGACTCA AATGCTGGTT GAGCGTAAGC TTGAAGCCGA AGAAGGCAAG
AGCCGCCATG ACCTTGGCCG CGATGCTTTT ATGGAAAAAG TATGGGAATG GAAAGCGCAA
TCTGGCGGCA CCATCACTAA GCAGCTGCGT CGTATGGGCG CCTCTGTGGA TTGGGACCGT
GAGCGCTTTA CCATGGACGA AGGCTTGTCT AAAGCCGTTC AAGAAGTGTT TGTCCGTCTC
TATGAAGATG ATTTGATTTA CCGTGGTAAA CGTTTAGTGA ATTGGGATCC TAAACTACAT
ACCGCGATTT CTGATCTCGA AGTGGAAAAC AAAGAAAAGC AAGGCCACAT GTGGCACCTA
CGTTATCCAT TAGCCGATGG CGAGCTGACT GCCGACGGTA AAGATTACCT CGAAGTCGCC
ACCACGCGTC CAGAAACTAT GCTGGGCGAT AGCGCGGTTG CAGTTCATCC AGACGATGAG
CGTTATCAAG CGCTGATCGG CAAATTTATT CTGCTGCCTA TCGTTAATCG TCGCATCCCT
ATCGTTGCCG ATGACTATGT AGACATGGCC TTTGGCACAG GCTGTGTGAA GATCACTCCT
GCCCACGACT TTAACGACTA TGAAGTCGGT AAACGTCACA AACTTCCTAT GTTCAACGTG
TTGACCTTAG ATGCGGCCAT TCGTGCATCC GCTGAAGTCG TCAATACCGA TGGCACCATC
AACACTAGCT TAGATGGCAG CCTGCCAGAG CGTTTCGCAG GCCTTGACCG TTTCAAAGCC
CGTGATGCTA TCGTGGCCGA GTTTGAAACC TTAGGTCTGC TCGAAAAAAT CGCGCCACAT
GGCCTAAAAG TGCCCTACGG TGACCGCTCT GGCGTGGTAA TCGAACCAAT GCTGACCGAT
CAATGGTACG TCGCCGTTGC GCCTATGGCG AAAACCGCTA TCGAAGCCGT TGAAAATGGC
GACATTAAGT TTGTGCCGCA GCAATACGAA AACATGTACT TCTCTTGGAT GCGAGACATT
CAAGATTGGT GTATCTCTCG CCAATTATGG TGGGGTCACC GCATCCCCGC TTGGTACGAT
GCGAACGGTA AGGTGTATGT TGGCCGTAAC GAAGCTGAAG TGCGTGCTAA GCACAATATC
GATGATTCAA TTGCCCTGCG CCAAGATGAA GACGTACTGG ATACTTGGTT CAGCTCAGCC
CTGTGGACAT TCTCAACCTT AGGCTGGCCT GACAATGTTG AAGATTTAAA AACCTTCCAC
CCGACCGACG TGTTGGTGAC GGGTTTTGAC ATCATCTTCT TCTGGGTTGC CCGTATGATC
ATGATGACCA TGCACTTCAT CAAAGATGAA GACGGTAAGC CACTGGTGCC ATTTAAAACC
GTTTATGTGA CTGGCCTTAT CCGCGATGAA GCGGGTAACA AGATGTCAAA ATCTAAGGGC
AACGTACTTG ACCCATTGGA TATGATTGAC GGTATCGATC TAGAATCCCT AGTTGAAAAA
CGCACCGGCA ACATGATGCA ACCTCAACTT GCCGCCAAGA TTGAAAAGAG CACCCGTAAA
GAATTTGAAA ACGGTATCGA AGCCCACGGT ACCGATGCCC TGCGCTTTAC CCTAGCGGCA
ATGGCCTCAA CTGGCCGTGA TATCAACTGG GATATGAAGC GTTTAGACGG TTACCGCAGC
TTCTGTAACA AGCTTTGGAA CGCGTCACGT TACGTGCTGA TGAATACCGA AGGCCAAGAT
TGCGGCCCGA ACTCACCGGA TTACCAAGGC GGCGAGATGG AACTGTCACT GGCGGATCGC
TGGATCATCG GTTTATTCAA CCAAACCGTG AAAACCTACG ACGACCACAT GGCAAACTAC
CGCTTCGACC TTGCGGCGAA CACGCTGTAC GAGTTCACTT GGAACCAGTT CTGCGATTGG
TATTTAGAGT TAACTAAACC AGTACTGCAA AACGGCAATG AAGCGCAAAT GCGTGGCACC
CGCCATACGC TGGTCAATGT GTTAGAAGCG ATGCAACGCT TGATGCACCC AATGATGCCA
TACATCACTG AAACCATCTG GCAACGCGTT AAACCCCTGA CTGGCGCCCA AGGCGATACC
ATCATGCTGG CACCATTCCC AAGCTACGAT GCCGCCAAAG TAGATGCGAC CGCGATGGCC
GATCTCGAGT GGGTTAAGCA AGTTATTGTT GCAGTGCGTA ATATCCGTGC CGAGCTCAAT
ATTGCACCGT CGAAGCCATT AAATGCCCTA CTACGTGGCG TGAGTGCCCA AGACCAAGGC
CGTGTTGAAG CGAACCAAGC CTTCTTCACA ACGCTTGCGC GCTTAGAGAG CATGACGATT
CTTGGCGAAG GTGAAACGGC GCCTATGTCG ACCACAGGCC TGATCGGCGA AATGGAATTA
TTAATTCCGA TGGCAGGTCT GGTGGATGTC GCGGCCGAAA TGGCTCGCAT CGACAAGCAG
CTTGAGAAGC TGACTCAAGA GATTGCTCGT ATCGAAGGTA AATTATCGAA TGAAGGCTTC
GTCGCGAAAG CACCGCCAGC CGTCATTGAT AAAGAGCGCG CCAAGATGGC CGATCTGAGC
CGTGATATGG ACAAACTAAA AGAGCAAAAA GCCGAGTTTG CTAAGCTAGA AGCCTAA
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| Protein sequence | MEKTYDPQSI EQTLYQNWEE QGYFKPHGDA SQGNYCIMIP PPNVTGSLHM GHAFQDTIMD
TLIRYQRMKG KNTLWQVGTD HAGIATQMLV ERKLEAEEGK SRHDLGRDAF MEKVWEWKAQ
SGGTITKQLR RMGASVDWDR ERFTMDEGLS KAVQEVFVRL YEDDLIYRGK RLVNWDPKLH
TAISDLEVEN KEKQGHMWHL RYPLADGELT ADGKDYLEVA TTRPETMLGD SAVAVHPDDE
RYQALIGKFI LLPIVNRRIP IVADDYVDMA FGTGCVKITP AHDFNDYEVG KRHKLPMFNV
LTLDAAIRAS AEVVNTDGTI NTSLDGSLPE RFAGLDRFKA RDAIVAEFET LGLLEKIAPH
GLKVPYGDRS GVVIEPMLTD QWYVAVAPMA KTAIEAVENG DIKFVPQQYE NMYFSWMRDI
QDWCISRQLW WGHRIPAWYD ANGKVYVGRN EAEVRAKHNI DDSIALRQDE DVLDTWFSSA
LWTFSTLGWP DNVEDLKTFH PTDVLVTGFD IIFFWVARMI MMTMHFIKDE DGKPLVPFKT
VYVTGLIRDE AGNKMSKSKG NVLDPLDMID GIDLESLVEK RTGNMMQPQL AAKIEKSTRK
EFENGIEAHG TDALRFTLAA MASTGRDINW DMKRLDGYRS FCNKLWNASR YVLMNTEGQD
CGPNSPDYQG GEMELSLADR WIIGLFNQTV KTYDDHMANY RFDLAANTLY EFTWNQFCDW
YLELTKPVLQ NGNEAQMRGT RHTLVNVLEA MQRLMHPMMP YITETIWQRV KPLTGAQGDT
IMLAPFPSYD AAKVDATAMA DLEWVKQVIV AVRNIRAELN IAPSKPLNAL LRGVSAQDQG
RVEANQAFFT TLARLESMTI LGEGETAPMS TTGLIGEMEL LIPMAGLVDV AAEMARIDKQ
LEKLTQEIAR IEGKLSNEGF VAKAPPAVID KERAKMADLS RDMDKLKEQK AEFAKLEA
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