| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1074 |
|---|
| Symbol | |
|---|
| ID | 4250779 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 1256292 |
|---|
| End bp | 1259441 |
|---|
| Gene Length | 3150 bp |
|---|
| Protein Length | 1049 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 638117647 |
|---|
| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
|---|
| Protein accession | YP_733211 |
|---|
| Protein GI | 113969418 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGTCGC AGTTTTTTAT TAAAAGACCG ATATTTGCAG CCGTTCTCTC GCTGCTATTT
TTTATCACAG GGGCGATTGC CGTCTGGCAA TTACCCATTA CCGAATACCC TGAAGTGGTG
CCTCCGACGG TCGTGGTAAC CGCCAACTAC CCTGGCGCTA ACCCTAAAGT TATTGCTGAA
ACGGTTGCCT CGCCCTTAGA GCAGGAAATC AACGGCGTCG AAGACATGCT GTATATGTCA
TCGCAGGCGA CGTCCGATGG ACGCATGACC TTGACCATCA CCTTTGCCAT TGGCACCGAT
GTGGACAGGG CGCAAACCCA AGTACAGAGC CGGGTTGACC GTGCTATGCC ACGTTTACCG
CAGGAAGTTC AACGCCTAGG GATTGTGACC GAAAAATCAT CGCCAGACTT AACCATGGTG
GTGCATTTAC TGTCGCCGGA TAACCGTTAT GACATGCTGT ATTTGTCTAA CTACGCGGCG
CTCAACGTAA AAGATGAGTT AGCACGCATC AAAGGCGTGG GCGCGGTGCG TTTATTCGGT
GCGGGCGAAT ATAGTCTGCG GATCTGGCTT GACCCCAATA AAGTCTCGGC GCTTGGCATG
TCGCCAGCTG AAATTATCGC CGCCGTACGT GAGCAAAATC AACAAGCGGC AGCGGGCAGT
TTAGGGGCGC AGCCTAGTGG TAATGCCGAC TTCCAACTCT TGATTAACGT TAAGGGTCGT
CTGACTGAAC TGTCAGAATT CGAAGACATT ATCATCAAGG TCGGTCAAAA CGGTGAGGTG
ATCCGTCTTA AGGATGTGGC CCGTGTAGAG CTCGGTGCAA CGAGTTATGC GCTGCGTTCA
TTGCTGGATA ACAAAGACGC GGTAGCGATC CCAGTGTTCC AAGCATCAGG CTCGAATGCG
ATTCAAATCT CCGATGATGT GCGCGCCGAA ATGGCAAGAC TGGCGAAGTC TTTCCCAGAA
GGGCTGCAAT ACGAGATTGT CTACGACCCG ACTGTGTTTG TGCGTGGCTC TATCCATGCG
GTGGTGAAAA CCCTGCTCGA AGCCGTGCTC TTAGTGGTGC TCGTGGTGGT GCTGTTCCTG
CAGACTTGGC GCGCCTCGAT TATTCCGCTG GTGGCCGTGC CTGTGTCTTT GGTGGGTACC
TTCGCCTTTA TGCACTTGAT GGGCTTCTCG CTCAATGCGT TGTCGCTGTT TGGTCTGGTG
CTGGCCATCG GGATTGTGGT CGACGATGCC ATCGTGGTGG TAGAGAACGT GGAGCGAAAT
ATCGCTTCGG GTTTAAGCCC CATTGCCGCA ACACAAAAAG CCATGAAGGA AGTGACTGGG
CCGATTGTGG CAACCACCTT AGTGTTGGCC GCGGTATTTA TTCCGACCGC CTTTATGAGC
GGATTAACCG GGCAGTTTTA TAAGCAGTTC GCGCTGACTA TCACGATTTC GACCTTTATT
TCGGCCATTA ACTCGCTCAC CTTGAGCCCA GCGTTATCGG CATTGTTACT CAAGGGCCAT
GACGCGCCTA AAGATGCGCT CACTCGGTTA ATGGATAAGC TGTTTGGTGG TTGGTTATTT
ACGCCATTCA ATCGCTTATT CAACCGAGCA TCAGAGGGTT ATGGCTATTT AGTGCGTAAG
GTGATCCGTT TTGGCGGCAT TATCGGACTG GTGTATCTGG GTATGGTTGC GCTTACGGGC
GTGCAATTTG TAAATACCCC AACGGGCTAT GTGCCAGGAC AGGATAAACA GTATTTAGTG
GCATTTGCCC AATTACCGGA TGCGGCCTCA CTCGAGCGTA CCGATGCGGT GATCAAGAAA
ATGTCCGACA TCGCCTTAAA TCACCCCGGT GTGGCGCACT CTATTGCCTT CCCCGGTCTG
AGTATCAACG GTTTTACCAA TAGTCCTAAC TCGGGCGTGG TGTTTGTTGC CCTAGATGAT
TTTGAGTTAC GTAAGAGTCC TGAACTGTCG GCTAATGCGA TTGCCGGCCA ATTAAATCAG
CAATTTGCTG GTATTCAGGA TGCGTTTATT GCCATCTTCC CGCCGCCACC TGTGCAAGGC
CTCGGCACTA TTGGAGGGTT CCGTCTGCAA ATTCAAGACA GAGCCAACCT TGGTTATGAG
GCCTTGTATC AGGTGACCCA ACAAGTAATG TACAAGGCGT GGGCCGATCC ACAATTAGCG
GGGATTTTCT CCAGCTATCA AGTGAACGTG CCACAACTTG AACTGGATAT CGATCGGACT
AAAGCGAAAC AGCAGGCAGT GTCGCTCGAT CAAATTTTCC AGACATTACA AACCTATATG
GGCTCGACCT ATGTCAACGA CTTCAATCGT TTCGGTCGAA CCTATCAGGT GAATATGCAG
GCCGACGAAG CCTTCCGTCA AAGCCCGCAG CAGATTAGTC AGCTAAAAGT GCCTAATGTT
AATGGCGATA TGATCCCACT CGGCTCCTTT ATCAATGTGA GTCAGAGCGC GGGGCCAGAT
CGTGTAATGC ACTATAACGG TTTCACCACG GCTGAGATTA ACGGTGGCCC AGCACCCGGT
GTGAGTTCGG GCCAAGCGCA GGCAGCGATT GAGAAAATCC TCGCCGAGAC TTTGCCGATA
GGCATGACCT ACGAGTGGAC TGAGCTGACC TATCAGCAGA TCCTCGCCGG TAACACTGGT
TTGTTAGTGT TCCCTCTGGT GATCCTACTG GTGTTTATGG TGCTGGCGGC GCAGTACGAG
AGTTTGAGTC TACCATTGGC GATTATCTTA ATCATTCCAA TGACCTTGCT TTCGGCACTC
AGTGGCGTGC TTATCTATGG CGGCGATAAT AATATTTTCA CCCAGATTGG TCTTATCGTC
CTCGTGGGCT TAGCGACCAA GAACGCGATT CTGATTGTCG AATTTGCCAA GGAAAAACAA
GACCATGGTA TGGAAGTCAT GGAGTCGATT CTCGAGGCGG CGCGCTTACG TTTACGCCCC
ATCTTGATGA CCTCTATTGC CTTTATCATG GGGGTGGTGC CCATGGTGTT CTCAACGGGC
GCGGGCGCCG AGATGCGTCA GGCCATGGGG GTAGCGGTAT TTGCCGGTAT GATAGGGGTG
ACACTGTTTG GTTTGATCCT GACGCCGCTA TTTTACTACG CCCTCGCTAA ACGCGGTCGC
CGTAAATCGG AAGCGCTAAC GGCTCAATAG
|
|---|
| Protein sequence | MLSQFFIKRP IFAAVLSLLF FITGAIAVWQ LPITEYPEVV PPTVVVTANY PGANPKVIAE
TVASPLEQEI NGVEDMLYMS SQATSDGRMT LTITFAIGTD VDRAQTQVQS RVDRAMPRLP
QEVQRLGIVT EKSSPDLTMV VHLLSPDNRY DMLYLSNYAA LNVKDELARI KGVGAVRLFG
AGEYSLRIWL DPNKVSALGM SPAEIIAAVR EQNQQAAAGS LGAQPSGNAD FQLLINVKGR
LTELSEFEDI IIKVGQNGEV IRLKDVARVE LGATSYALRS LLDNKDAVAI PVFQASGSNA
IQISDDVRAE MARLAKSFPE GLQYEIVYDP TVFVRGSIHA VVKTLLEAVL LVVLVVVLFL
QTWRASIIPL VAVPVSLVGT FAFMHLMGFS LNALSLFGLV LAIGIVVDDA IVVVENVERN
IASGLSPIAA TQKAMKEVTG PIVATTLVLA AVFIPTAFMS GLTGQFYKQF ALTITISTFI
SAINSLTLSP ALSALLLKGH DAPKDALTRL MDKLFGGWLF TPFNRLFNRA SEGYGYLVRK
VIRFGGIIGL VYLGMVALTG VQFVNTPTGY VPGQDKQYLV AFAQLPDAAS LERTDAVIKK
MSDIALNHPG VAHSIAFPGL SINGFTNSPN SGVVFVALDD FELRKSPELS ANAIAGQLNQ
QFAGIQDAFI AIFPPPPVQG LGTIGGFRLQ IQDRANLGYE ALYQVTQQVM YKAWADPQLA
GIFSSYQVNV PQLELDIDRT KAKQQAVSLD QIFQTLQTYM GSTYVNDFNR FGRTYQVNMQ
ADEAFRQSPQ QISQLKVPNV NGDMIPLGSF INVSQSAGPD RVMHYNGFTT AEINGGPAPG
VSSGQAQAAI EKILAETLPI GMTYEWTELT YQQILAGNTG LLVFPLVILL VFMVLAAQYE
SLSLPLAIIL IIPMTLLSAL SGVLIYGGDN NIFTQIGLIV LVGLATKNAI LIVEFAKEKQ
DHGMEVMESI LEAARLRLRP ILMTSIAFIM GVVPMVFSTG AGAEMRQAMG VAVFAGMIGV
TLFGLILTPL FYYALAKRGR RKSEALTAQ
|
|---|
| |