| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0960 |
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| Symbol | |
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| ID | 4251611 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 1123923 |
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| End bp | 1125278 |
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| Gene Length | 1356 bp |
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| Protein Length | 451 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 638117523 |
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| Product | DEAD/DEAH box helicase domain-containing protein |
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| Protein accession | YP_733097 |
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| Protein GI | 113969304 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.25993 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCATTC CTAAGCCTTT TTCTTCCACA GAGTCTTCCC CTGAGTCGTT AACCTTTGCC
GAGCTTGGCG TTAATGCGGC GTTATGTTCG GTATTGCCTG CCGCGCTCAA GCATCCGACA
CGGGTACAGC AATTAGCGAT TCCGGCTATT CTTGCGGGAC GAGATGTGTT AGCACTGTCG
CAAACCGGTA GCGGTAAAAC CTTGGCTTTT GGATTGCCCT TGCTACAAGC CATCCATCAA
CAACTTCAGC AGCAAGTGGG GTTAGCGGGG GCTGAGTCAG TGCCATCTTT GGCCAGCAAT
GCGCAGGCCT TGGTGCTGGT GCCGACACGG GAATTGGCGC AGCAGGTAAC GACAGCGCTG
CACGCGCTGG CGAGTAAGTT ATCGTCTTCT TTGAAGATAC AGCTCCTCTG TGGCGGCATC
GCGCAGGAAG AACAATTAGC CGAACTTGCC GCTAAACCGC AGCTTGTCGT GGCAACCCCT
GGGCGCTTAT TGGATTTATG CACTCAGTCC CATATCAGTC TCGACTCGAT AAAATATCTA
GTGCTAGACG AAGCAGACCG CTTACTGGAA ATGGGATTTT GGCCCGATGT GCAAAAGCTG
ATGGCAATGA TGCTTAAGCG TAAGCAAACC TTACTGTTTT CTGCCACCTT GCCAGAGGCG
TTAGATGCCT TGGCGGGTAA ATTGCTGACC AACAATCCCC TACGGGTTGA GGCCAGTACA
CGCAATGCTA TCGCCGCCGA AATCGAAGAG CGACTGTATT TCGTCAATAA GGGCAGTAAG
GCGCAGGCAT TGATTGCGTT ACTCAAACAA TATCAATGGC CGCAAGTGCT AGTGTTTATC
AGTGCCCGCG ATGATGCGGA TGCGATAGCG AAACGACTCG TTAAGGCGGG GATAAATGCT
GCTGCGCTGC ACGGCGAAAA GGATCAAACC GTGCGCAGTC AAACCTTGGC CGACTTTAAA
GCCAATCGCA TTCAAGTGGT GGTGGCGACG GATTTAATGG CCCGAGGTAT TCATGTTGAT
GCCTTGCCTG TGGTGATCAA TTTAGATTTA CCCACCAGTG CGCCTGTATA TGTGCACCGT
ATTGGCCGCA CCGCAAGGGC GGGCGCCAAA GGGCTCGCCA TCTCTTTGGT GTGCCATGGT
GAAATGCCAA GCTTAAGCGC GATCCGCAAC TTGACGGCGC GTGAGTTACC GTTAGCATCA
TTGGCAGACT TTCCTGTGAC CGATAAGCCG AGTGAAAGAG CTAGAGAGGA TGGTGCTGAG
CATAACGTTG CGCCTAAGCG TCCACCTCGG GATAAACAGG CGAATCGTCG CAGTCTTAAT
AAGCACAGCG TCAAGGCATT TAAAGGTAAG CGTTGA
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| Protein sequence | MTIPKPFSST ESSPESLTFA ELGVNAALCS VLPAALKHPT RVQQLAIPAI LAGRDVLALS
QTGSGKTLAF GLPLLQAIHQ QLQQQVGLAG AESVPSLASN AQALVLVPTR ELAQQVTTAL
HALASKLSSS LKIQLLCGGI AQEEQLAELA AKPQLVVATP GRLLDLCTQS HISLDSIKYL
VLDEADRLLE MGFWPDVQKL MAMMLKRKQT LLFSATLPEA LDALAGKLLT NNPLRVEAST
RNAIAAEIEE RLYFVNKGSK AQALIALLKQ YQWPQVLVFI SARDDADAIA KRLVKAGINA
AALHGEKDQT VRSQTLADFK ANRIQVVVAT DLMARGIHVD ALPVVINLDL PTSAPVYVHR
IGRTARAGAK GLAISLVCHG EMPSLSAIRN LTARELPLAS LADFPVTDKP SERAREDGAE
HNVAPKRPPR DKQANRRSLN KHSVKAFKGK R
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