| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0827 |
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| Symbol | lysS |
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| ID | 4251967 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 970504 |
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| End bp | 972006 |
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| Gene Length | 1503 bp |
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| Protein Length | 500 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638117390 |
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| Product | lysyl-tRNA synthetase |
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| Protein accession | YP_732964 |
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| Protein GI | 113969171 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1190] Lysyl-tRNA synthetase (class II) |
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| TIGRFAM ID | [TIGR00499] lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.81959 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0384226 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACTGAAC AAGTACAAGA TGAAAACAAA CTGATTGCCG AGCGTCGTGC CAAGCTAGAA
AGCATTCGCC CGAACTGCAG CGCTAATGCT CACCCTAATA CTTTCCGTCG CACCCACAAA
GCGGCTGAGT TGCAGGAAAA ATACGGTCAA AACACTAAGG AAGAACTCGA AGCCTTAGGT
TTTAAAACCA GCATCGCTGG CCGTATCATG GCAAAACGTG GCCCATTCCT GGTGATCCAA
GACGTGTCTG GTCGTATCCA AGCTTACGCT GAAAAGGGCG TTCAAGCGGA TCTGAAAGAC
CGTTACCAAG GTTTGGATAT CGGTGACATC ATCGGCGTAA CGGGTCAGTT GCACTTGTCT
GGTAAAGGCG ATCTGTACGT GAACATGGAA GAGTATCAAC TGCTGACTAA AGCACTGCGT
CCTCTGCCAG AAAAATTCCA CGGCCTGACC GACCAAGAAA CTCGTTACCG CCAACGTTAT
GTGGACTTAA TCGTTAACGA AGAATCTCGT CAAGCCTTCG TCATGCGTTC AAAAGTGGTT
GCTGCTATCC GTAACTTCAT GATCAAAAAA GAGTTCATGG AAGTTGAAAC CCCAATGATG
CACGTGATCC CAGGCGGCGC TTCAGCCCGT CCATTTATCA CTCACCACAA TGCGCTGGAC
ATGCCAATGT ACCTGCGTAT CGCGCCAGAG TTATACCTCA AGCGTTTAGT GGTCGGTGGT
TTTGAGCGTG TGTTCGAAAT CAACCGTAAC TTCCGTAACG AAGGTCTGTC GCCACGCCAT
AACCCAGAAT TCACTATGAT GGAATTCTAT ATGGCCTATG CAGACTACAA AGATCTGATG
GACTTAACCG AAGAACTGTT AAGCTCAATC GCGATTGAAC TGTTAGGTAG CGCGCAAATG
CCATATGGCG AGCACACTGT TGATTTCGGT GGCCCATATG CCCGTTTAAG CATGTTAGAA
GCGATTCAGA AATACAATCC TGACAACGCG ACTATCCAAG CCATGACCTA CGAGCAAGTG
AAAGATCTTG AATTCATGCG TGAACTGGCG ATCAGCCTAG GCATCAAGAT CGAGAAGTTC
TGGACCTGTG GTCAGCTATT AGAAGAAATC TTCGGTGAAA CTGCTGAATG GCAGCTAATG
CAACCGACTT TCATCACTGG CTACCCAGCG GATATTTCGC CACTGGCACG TCGTAACGAT
GACAATCACT TCATCACCGA CCGTTTTGAA TTCTTCATCG GTGGCCGTGA AGTGGCTAAC
GGTTTCAGCG AGTTAAACGA TGCTGAAGAT CAAGATAGCC GCTTTAAGGC GCAGGTTGAT
GCGAAAGACG CAGGTGACGA TGAAGCCATG TTCTACGATG CAGACTACAT CACTGCACTG
GAACACGGTT TACCACCAAC AGCGGGTCAA GGTATCGGTA TCGACCGTTT AGTGATGCTA
TTCACTAACA CTCATACTAT CCGTGACGTG ATCCTGTTCC CAGCGATGCG CCCACAGGCC
TAA
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| Protein sequence | MTEQVQDENK LIAERRAKLE SIRPNCSANA HPNTFRRTHK AAELQEKYGQ NTKEELEALG
FKTSIAGRIM AKRGPFLVIQ DVSGRIQAYA EKGVQADLKD RYQGLDIGDI IGVTGQLHLS
GKGDLYVNME EYQLLTKALR PLPEKFHGLT DQETRYRQRY VDLIVNEESR QAFVMRSKVV
AAIRNFMIKK EFMEVETPMM HVIPGGASAR PFITHHNALD MPMYLRIAPE LYLKRLVVGG
FERVFEINRN FRNEGLSPRH NPEFTMMEFY MAYADYKDLM DLTEELLSSI AIELLGSAQM
PYGEHTVDFG GPYARLSMLE AIQKYNPDNA TIQAMTYEQV KDLEFMRELA ISLGIKIEKF
WTCGQLLEEI FGETAEWQLM QPTFITGYPA DISPLARRND DNHFITDRFE FFIGGREVAN
GFSELNDAED QDSRFKAQVD AKDAGDDEAM FYDADYITAL EHGLPPTAGQ GIGIDRLVML
FTNTHTIRDV ILFPAMRPQA
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