Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_0783 |
Symbol | |
ID | 4251505 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 910387 |
End bp | 911130 |
Gene Length | 744 bp |
Protein Length | 247 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 638117346 |
Product | lysine decarboxylase transcriptional regulator, CadC |
Protein accession | YP_732920 |
Protein GI | 113969127 |
COG category | [K] Transcription |
COG ID | [COG3710] DNA-binding winged-HTH domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGGTGG GGGGCTGTTG GTTTGACCGT GAGCGTGGCT TACTTGTCGA ACAGGCTCGT GATGAATCTT GGCACCTTCC CCGTGCCGAG TTGCAAGTGT TGAGCCTGTT GGTTGAACAT CAAGGCAAAC TGGTCTCCAA GCATGAGCTG AAGACTGGCG ATGGGGCGCA TCCTCCTCTT ACTGACACTT CGTTAGCGCG GGCGGTCTTT ATGATCCGCT CCTTCCTCGG GCCCCAATAT GAGGGGCTGA TTGAAACCGT CAAAGGTCAG GGCTATCTGC TGCACAGCAC CCAAGGACAA AGGTTTAAAA GCTTACGTTA TCCTAGGCTG CAATCCTTAC CTTGGTGGAG TGTGTTGCTG GTTTTTGGAT TTATGCTCGC GATTTCAGGC TTTTATCTTA GCCGAATCGA CCACAGCGTA CCGACTCAAC CTTTGCTCTC TACCGATTTG CCCTTAGCCT CGGGGCAACA TATTCGGCTG CATTTGTATG CCAATTCGAA AACCAACAAC ACCCTATTGT TTGAGTTAGG CGACCGCTTG GGCCAAGGGC TGAGTCGCTG CGGCCACAGT GATTGGTCCG AAGTGTACTC CTCGCTCTCC CACGATAAAC AGGTGCTCAA CATTACTATG CGGGGTTACA AACTCGGGCA ATCGGTGATC CGTAACTTGA AGATCAGCGA CTTTAGACGA CCGAAGGAAT TTATCGATGC AAACTGGCTG CTGGAGGTCG GGATCTGTGG CTAA
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Protein sequence | MQVGGCWFDR ERGLLVEQAR DESWHLPRAE LQVLSLLVEH QGKLVSKHEL KTGDGAHPPL TDTSLARAVF MIRSFLGPQY EGLIETVKGQ GYLLHSTQGQ RFKSLRYPRL QSLPWWSVLL VFGFMLAISG FYLSRIDHSV PTQPLLSTDL PLASGQHIRL HLYANSKTNN TLLFELGDRL GQGLSRCGHS DWSEVYSSLS HDKQVLNITM RGYKLGQSVI RNLKISDFRR PKEFIDANWL LEVGICG
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