| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0760 |
|---|
| Symbol | |
|---|
| ID | 4251271 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 884777 |
|---|
| End bp | 887344 |
|---|
| Gene Length | 2568 bp |
|---|
| Protein Length | 855 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 638117323 |
|---|
| Product | peptidase S45, penicillin amidase |
|---|
| Protein accession | YP_732897 |
|---|
| Protein GI | 113969104 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2366] Protein related to penicillin acylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.526206 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTCA ACAAACTCAT GATCGCGATG GGGATGGCCT GCGGCGTTAT GCTCACAGGC
TGTAACGACA GCGAAGATAG CACTCCACCT ACCGAACCTG AAACCCAGCT GCAAACCTTT
GCCCCCAACG GCTTACTCAA AGCCAATATT CGTCGAACTA CCTACGGTGT GCCCCATATC
CAAGCCGATA ACTTAGAAAG CTTAGGTTTT GGTAGCGGTT ACGCGCAGGC GCAGGACAAC
CTCTGTGTGC TCGCCGATGG TTTTATTAAG GCCAACTCCC AACGCTCTAT GTACTTTGGT
CCCCATGCGT CGATTGATTT CACCACAGGG CAGCCCACCG CCGAAGACAA TGGCAACTTA
ATCTCCGACT TTGCCTATAA AGCCTTAAAA ATCCGTGAGC AAGCCGAGGC CAAATGGCCG
CAGTTTAGCG AGCGCTCCCG TGCATTAATC CAAGGTTTTA CCGCAGGTTA TAACCAATAC
CTTGCCGATG TTGAGGCGGG TAAACAAACC GCCGAACCTT TCTGTGGCGG TCAGCCGTGG
GTGAAGCCCA TAGTGCCAGA GGATGTGGTC ACTTATCTTT TTTCCATCGC CCTATTACCC
GGCGCGGCTA ACTTCCTCGA TTTGATTTTC TACGCCAACC CAGGGGATGG GCAGGAGTAC
ATGCCGCGCA TCGTCGGACC TGCACCAAGC CAAGAACAAA CTGCGTTTGT CAGCGATATG
CAGTCTAAGT TGCTTGCCCG TGCGGCGCGC ATTAGCACAC CCGAGACTAA TCCACGGGAT
TTAGGCTCTA ACGGTTGGGG ACTGGGTAAA GATAAGACCG AAAATGGTCG TGGCATGGTG
CTAGGCAATC CGCATTTCCC ACACACGGGC AACCTGCGCT TCTGGCAATC ACACATTACT
ATCCCTGGCC AATTGGATAT GATGGGCGGC TCGCTCGTGG GCATGCCAGG CCCTATCAAC
ATCGGGTTTA ACAAAGACTT AGCTTGGACT CATACCTTCT CAACCGCTGA ACACTTTGTG
ATGTACAACC TCGAGCTGGT TTCGGGCGAC AGATTGCAAT ACCTGTTCGA TGGGCAGCCG
ATGCCGATCA ATAAAGAGAC AGTGTCTATC CTAGTGAACG CTGGCCCCAC TGGCATGTTA
GTGGCTGAAA AGGATATTTA CACCACCGCA AAAGGACCTA TGGTCGAGGC GCCACCCTCG
CTTGCACCTT TTGGTTGGGA TGATGGCAGT GCCTTTATGA TCCAAGATGC CAACATGGCT
AATATGGATC CGGTCGATCA TTGGCTCGCC ATGAACTTAG CGACCAATAA AGACGAATTC
CAACAAGCCT TTAAAGACTA CGATGGGGTA ATTTTCAATA ACACTATGTA TGCCGATAAA
GAGGGTAACG CCTTCTATAT CGACGACTCG ACCGTGCCCG GTTTATCCGA GTCTGCCGTG
GTGGTGCTCA AGACTTCGCC CGATATTAAG GCGGCCAAGC AGCAGGCGGG CTTTACTATT
CTGCCGGGGA ATACCTCGTT ATTTAGCTTT AGTGGCCCAA CCCCCTATGA GCGTGCGCCT
AAGCTTGAGC GCAGTGACTT TGTGCAAAAC TCCAATGACT CCTTCTGGTC TACCAACTTA
AACGAGCCAC TGACGTACTT CTCGCCCATG TATGGTCCAG AAGCCGGGCA ATTATCGCTG
CGTACTCGTA TGGGCTTAAC CCTAATGCAG GATGCGGCGG GTAGCGATGG CAAGTTTAAT
CTGGAAGAGT TAGAAGCTGC GGTATTGTCG AATCGCAGTT ATTTAGCTGA GTTGGTATTA
CCGGATTTGA TTGCCCAATG TGAGGCGCAG GGCAGTACGC CTGTGGTGGT ATCTGCGAGC
TTATCTAAGG ATCTCACCTC AGCCTGTGCA GCGCTCAAAG CTTGGAACGG TAAGCAAGAT
AACGACAGTA AAGGCGGTGC CTTACTGCGT GAGTTTGCCC ATCAGTTCAG CCAAAAAACC
ATGCTGACCA AGGGATTCGA CCCCGTGAAT GCGGCGACCA CGCCTAATAC GCTTACCACC
GACGGTAGCG CATTAGTGGC GCTTGCCCAT GCGGCCTTGA ATCTTGAAGC CGCAGGTTTT
GCCTTAGATG CACCGCTCGG TGATGTGCAG TTTGTCGAGA AATCACTCCC CGATGGCACT
GCCAGCGGCG CGCGTTTACC TTGGCCGGGC AGCCATAACG CAGAAGGTGG ATTCAACGTA
TTTTCGACGA GCTTATCGGG AGATGACACT CTGATCCCGC AGCATAAGTA CGCGCCTTTG
ATGGACGTTG TTACGGGTAA GGCGATGGCC TCAGGCATGA CGGTCAAGGG TTACCAAGTG
CGTTACGGCT CAAGCTGGAT GATGGCGGTA AGCTTTACCG ATGAAGGCCC TGTCGCGCGC
GGCATACTCA CCTATTCGGA GTCGAGCAAT ATACTGTCAC CTTCCTTTAC CGACCAAAGC
AATCTGTATT CCAGCAGTAA GAGTTTCCGT CCTTTACTGT TTAAGGAAGC CGATATTGCC
CCTGCGGTGA TTTCGACTAC AGAGCTGACA CTGCAAAAAG CTCAGTAA
|
|---|
| Protein sequence | MKFNKLMIAM GMACGVMLTG CNDSEDSTPP TEPETQLQTF APNGLLKANI RRTTYGVPHI
QADNLESLGF GSGYAQAQDN LCVLADGFIK ANSQRSMYFG PHASIDFTTG QPTAEDNGNL
ISDFAYKALK IREQAEAKWP QFSERSRALI QGFTAGYNQY LADVEAGKQT AEPFCGGQPW
VKPIVPEDVV TYLFSIALLP GAANFLDLIF YANPGDGQEY MPRIVGPAPS QEQTAFVSDM
QSKLLARAAR ISTPETNPRD LGSNGWGLGK DKTENGRGMV LGNPHFPHTG NLRFWQSHIT
IPGQLDMMGG SLVGMPGPIN IGFNKDLAWT HTFSTAEHFV MYNLELVSGD RLQYLFDGQP
MPINKETVSI LVNAGPTGML VAEKDIYTTA KGPMVEAPPS LAPFGWDDGS AFMIQDANMA
NMDPVDHWLA MNLATNKDEF QQAFKDYDGV IFNNTMYADK EGNAFYIDDS TVPGLSESAV
VVLKTSPDIK AAKQQAGFTI LPGNTSLFSF SGPTPYERAP KLERSDFVQN SNDSFWSTNL
NEPLTYFSPM YGPEAGQLSL RTRMGLTLMQ DAAGSDGKFN LEELEAAVLS NRSYLAELVL
PDLIAQCEAQ GSTPVVVSAS LSKDLTSACA ALKAWNGKQD NDSKGGALLR EFAHQFSQKT
MLTKGFDPVN AATTPNTLTT DGSALVALAH AALNLEAAGF ALDAPLGDVQ FVEKSLPDGT
ASGARLPWPG SHNAEGGFNV FSTSLSGDDT LIPQHKYAPL MDVVTGKAMA SGMTVKGYQV
RYGSSWMMAV SFTDEGPVAR GILTYSESSN ILSPSFTDQS NLYSSSKSFR PLLFKEADIA
PAVISTTELT LQKAQ
|
|---|
| |