Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_0726 |
Symbol | panB |
ID | 4251762 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 847142 |
End bp | 847936 |
Gene Length | 795 bp |
Protein Length | 264 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 638117289 |
Product | 3-methyl-2-oxobutanoate hydroxymethyltransferase |
Protein accession | YP_732863 |
Protein GI | 113969070 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0413] Ketopantoate hydroxymethyltransferase |
TIGRFAM ID | [TIGR00222] 3-methyl-2-oxobutanoate hydroxymethyltransferase |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0275957 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTCTAAAG TTACTAGCTC AACCCTGTTG AAATACAAAC AGGAAGGTAG AAAATTCACC GCTCTGACAG CCTATGATGC CAGCTTTGCC AGTGCGTTCG ACGGCGAAGG CATCGATGTG CTACTGGTCG GCGATTCTTT GGGAATGGTT CTGCAAGGCC ACGATGATAC GCTGCCTGTC ACGACAGCCG ATATTGCTTA CCACACCCGT TGTGTGCGTC GCGGTATCGA GCGTTCACTG CTGATCGCCG ACATGCCATT TATGAGTTAC GCCACGCCAG AACAAGCAAT GGAAAACGCC ACTGCACTGA TGCAGGCGGG TGCCAATATG GTGAAGCTGG AAGGCGGTCA CTGGTTACTC GAAACCGTGA CTAAACTGAC CGAGCGCGGT ATTCCTGTCT GCGCCCACTT GGGCCTTACC CCGCAATCGG TACACGTTTT TGGTGGCTTT AAAGTACAAG GCCGCGATGC TGAAAATGCC CAGCGCATTC TCGATGAAGC CAAAGCCTTA GAAGCTGCTG GCGCACAACT CTTAGTGGTT GAATGTATTC CGGAATCTCT CGCCACCGCC ATCACTCAAG CATTAACTAT CCCAGTGATC GGCATCGGCG CTGGCGCCAC CACAGATGGT CAGATCCTAG TGATGCACGA TGTGCTCGGT ATTTCGAGTG GTTATATTCC ACGTTTTTCA AAGAACTACC TCAAGCAAAC GGGTGAAATC CGCTCGGCAG TACGCGCTTA TATTGAAGAA GTGGCCAATG GCACCTTCCC AAGTTCAGAG CACACATTTA GCTAA
|
Protein sequence | MSKVTSSTLL KYKQEGRKFT ALTAYDASFA SAFDGEGIDV LLVGDSLGMV LQGHDDTLPV TTADIAYHTR CVRRGIERSL LIADMPFMSY ATPEQAMENA TALMQAGANM VKLEGGHWLL ETVTKLTERG IPVCAHLGLT PQSVHVFGGF KVQGRDAENA QRILDEAKAL EAAGAQLLVV ECIPESLATA ITQALTIPVI GIGAGATTDG QILVMHDVLG ISSGYIPRFS KNYLKQTGEI RSAVRAYIEE VANGTFPSSE HTFS
|
| |