| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0642 |
|---|
| Symbol | |
|---|
| ID | 4251660 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 747496 |
|---|
| End bp | 748746 |
|---|
| Gene Length | 1251 bp |
|---|
| Protein Length | 416 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 638117205 |
|---|
| Product | sodium:dicarboxylate symporter |
|---|
| Protein accession | YP_732779 |
|---|
| Protein GI | 113968986 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1301] Na+/H+-dicarboxylate symporters |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0000153755 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGATTAAAT CACTTTCGAC ACGGATCTTT ATCGGTCTGT TTGCGGGACT TATTCTCGGC
ACCTTAGTGC AATATTTTCT AAACGATATT GGCTTCTTTT CTGGCAATTT AGTCGAACTG
GCTGGCGGCG TCGGCACTAT GTTCGTCAAT ATGATCATGA TGTTGGTCGT ACCGCTGGTG
TTTGTCAGTA TCGTTTGCGG CGTGTGTGAG CTGCAGGACT TAAAAAGCTT TGGGCGCCTT
GGCGGCAAAA CCTTCGGCTT TTACATCGTT AATACCGTGG TCGCTATCTC AACCGCCCTA
TTAGTCGTAT TACTGCTCGA CCCAGGTAAA GGCGTCGATA TGAGCAGCAC TGATGGGGTG
GCGATTACCG CGACTGAACT TCCCAGCTTA ATGGCGCTGC TGATTGATAT AGTGCCGCGC
AACCCAGTGG CGGCTTTTAT GTCGGGCAAT ATGCTGCAAG TGATCTTTAT GGCACTGATG
CTGGGCGGGG TGATCAAATC CCTCGGCGAG CATGTGGCTG GCGCGGTACA AGGTTTTCAA
ACCGCCAATA AAATCATGAT GAAACTGATT TCTGTGGTGA TGAGCCTTGC GCCTTATGGT
GTGTTTGCGC TGATGTTTAA GTTAGGCGCT ACCTTAGATG CGGCAGTATT TATGAGTGTG
CTCGAATACG TCATGATCAT TCTGGCGCTG CTATTACTGT GGATTTTTGT GGTCTATCCA
TTGGCAGTGG GTTTCTTCAC ACCGATTTCG GCCAAGAGCT TTCGCGAGAA AACCCAAGAG
CAAGTGCTGT TTTCCCTGTC TACCGCCAGC TCTAATGCCA CGATTCCTGT GACCATGCGC
ACCCTAACGG AAAAGCTTGG GGTTAATCGC GCCGTGGCAG GTTTTGGTGT GCCGCTTGGG
GCGACCATGA ACATGGGCGG CGTGGCGATT TATATCACGA TTGCGATTTT CTTTGTCGCC
AATGCCTTCG GTATGCCAAT CACCAGCGAG CAATTGCCAT CGCTGCTGTT TAGTATCTTT
TTATTATCTG TTGGCGCGGG TGGTGTGCCC GGTGGCGGCA TGGTGATGAT TGGGGTATTA
ATCCATCAAA TGGGCTTGCC GATTGAAGCC TTTGCGATTG TGGCCGCACT GGACCGCATC
ATCGACATGG TGCTGACCTC CTGCAACGTG GTGGGGGATA CGGCGGTGTT GACCATAGTC
GACCAAACCG AAAAGACCCA TCAAGTCGAG CTAGTCGATA GCGAGTCTTA A
|
|---|
| Protein sequence | MIKSLSTRIF IGLFAGLILG TLVQYFLNDI GFFSGNLVEL AGGVGTMFVN MIMMLVVPLV
FVSIVCGVCE LQDLKSFGRL GGKTFGFYIV NTVVAISTAL LVVLLLDPGK GVDMSSTDGV
AITATELPSL MALLIDIVPR NPVAAFMSGN MLQVIFMALM LGGVIKSLGE HVAGAVQGFQ
TANKIMMKLI SVVMSLAPYG VFALMFKLGA TLDAAVFMSV LEYVMIILAL LLLWIFVVYP
LAVGFFTPIS AKSFREKTQE QVLFSLSTAS SNATIPVTMR TLTEKLGVNR AVAGFGVPLG
ATMNMGGVAI YITIAIFFVA NAFGMPITSE QLPSLLFSIF LLSVGAGGVP GGGMVMIGVL
IHQMGLPIEA FAIVAALDRI IDMVLTSCNV VGDTAVLTIV DQTEKTHQVE LVDSES
|
|---|
| |