| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0601 |
|---|
| Symbol | |
|---|
| ID | 4251182 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 694402 |
|---|
| End bp | 695295 |
|---|
| Gene Length | 894 bp |
|---|
| Protein Length | 297 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638117164 |
|---|
| Product | HflC protein |
|---|
| Protein accession | YP_732738 |
|---|
| Protein GI | 113968945 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0330] Membrane protease subunits, stomatin/prohibitin homologs |
|---|
| TIGRFAM ID | [TIGR01932] HflC protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.000974479 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.00702769 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGGTAGAT TAAGTATTGT TCTGATTGCC ATAGTATTAG GCATAGGTCT GTCATCTGTG
ATGGTGGTTA ACGAAGGCGA GCGTGCGATT GTGGCGCGTT TCGGTGAAAT CGTTAAAGAC
AAGGTTGACG ACAAACAAGT GACCCGCGTT TTCGGTCCTG GCTTGCACTT TAAAGTGCCA
GTGATCGATA AGGTGAAGTT GCTCGATGCT CGTATTCAAA CCTTAGACGG TGCAGCGGAT
CGTTTCGTGA CCTCTGAGAA AAAAGATTTG ATGGTCGACT CTTATGTAAA GTGGCGTATT
TTCGATTTCG AAAAATACTA TCTCTCCACT AATGGCGGGA TTAAATCGAA TGCTGAAACC
TTACTGCAAC GTAAGATCAA CAACGATTTA CGTACCGAAT TTGGTCGTCG CACTATCAAG
GAAATCGTAT CTGGTAAACG CGATGAGCTG CAAAATGATG CGCTAGAAAA CGCCTCTGAA
AGCGCTAAAG ACTTAGGTAT TGAAGTCGTT GACGTGCGTG TTAAGCAAAT CAACCTTCCA
GCAAACGTGA GTAACAGTAT TTACCAACGT ATGCGTGCCG AACGTCAAGC GGTTGCTAAA
GAGCATAGGG CACAGGGTAA AGAGCAATCT GAAATCATTC GTGCAACGAT TGATGCCAAT
GTGACAGTGA AGATTGCCGA AGCTGAACGT AAGGCCTTAA CCATTCGCGG TGAAGGTGAT
GCATTAGCGG CGAAGATATA TTCTGACGCT TACAATAAAG ATCCTGAGTT CTTCAGCTTT
TTACGTAGCT TAGATGCTTA CCGTGCAAGT TTCTCCGGTA AATCTGATGT GATGGTGCTA
GAACCTGATA GCGAGTTCTT CAAGTATATG AAGAGCACTT CACCTAAGAA GTAA
|
|---|
| Protein sequence | MGRLSIVLIA IVLGIGLSSV MVVNEGERAI VARFGEIVKD KVDDKQVTRV FGPGLHFKVP
VIDKVKLLDA RIQTLDGAAD RFVTSEKKDL MVDSYVKWRI FDFEKYYLST NGGIKSNAET
LLQRKINNDL RTEFGRRTIK EIVSGKRDEL QNDALENASE SAKDLGIEVV DVRVKQINLP
ANVSNSIYQR MRAERQAVAK EHRAQGKEQS EIIRATIDAN VTVKIAEAER KALTIRGEGD
ALAAKIYSDA YNKDPEFFSF LRSLDAYRAS FSGKSDVMVL EPDSEFFKYM KSTSPKK
|
|---|
| |