Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_0517 |
Symbol | |
ID | 4251640 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 595325 |
End bp | 596617 |
Gene Length | 1293 bp |
Protein Length | 430 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 638117076 |
Product | RND family efflux transporter MFP subunit |
Protein accession | YP_732654 |
Protein GI | 113968861 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 42 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATTCAA TCACTCAGAA ATCTATTTTC CATTCTTTTT CTACTGTGTC TGCTACGGGC TTAAGGTCGT TGTTTACTCC TTCCCGCTTA GCGCTGGCGC TGATGCTTAC CTCGTTAACT ATTACGGCCC CCACCTTCGC GGGTGAAGGC CATGACCACG GCGCTGAAAA GGTGGCCAAT ACCGCTGAAA AGAGCGTAAG TGCAACAGAA GATGACCATG GTGAGCAGGC ACTCACTCTG ACGCCTGCGC AGTTGGAACT TGCAGGGATC CGCCTCTTAC CCCTGAGCAG TGACAGCTTA AGCCTAAGCA ATCTCAATCT CGATACTATG GCGACCGCCA CTCTAGTGGT CGACCGTGAT AGAACCGCCA CTTTGGCACC ACAGCTGGAT GTGCGTGTGC AGGCGCGCCA TGTTGTGCCC GGTCAAGAGG TGAAAAAAGG TGAGCCCTTA CTGACCTTAG GTGGGGCAGA AGTCGCCAAG GCGCAGGCCG AATATATCAA TGCCGCCGCT GAGTGGAACC GTGTGCGCCG CATGAGTGAA AGCGCCGTGA GCGTGAGCCG CAGAATGCAG GCGCAGGTCG ATGCCGAACT CAAGCGAGCG ATTCTGGAGG CGATCAAAAT GACGGCGGAA CAAATACGCA CCTTAGAGTC GACCCCAGAA GCTATCGGCA GCTATCAGTT ACTGGCGCCT ATCGATGGCC GTGTGCAGCA GGATATCGCC ATGCTAGGTC AAGTGTTCAC CGCTGGCACA CCATTAATGC AGTTGACCGA TGAGTCGCAT CTTTGGGTTG AAGCGCAATT AACCCCAGCA CAGGCGGCCA ATGTGAATGC CGGCGGCCCG GCGTTAGTGC AGGTCGGGGA TAAAACCTTG GCGGGCAAGA TTATCGGCCG TTCCCATGAG CTGGATAGCG TGACGCGCAC CGAGCAGATT TTAGTCAGCA TGCCAAACCC TGAGCATGTG TTGCACGCGG GACAATTTGC CGAGCTTTAC TTTGCCGATG CGCCTGCAAG TGCAGACGGA GCCGCTTCCT CATCGGGCTT CTCATCTGGA ATCGTCCTGC CCGATGCGGC GCTAACACGT GGCGGTGATG GTGATTGGCA GATTTTTGTT CAAGACGAAG ATGGTTTTGA AGCCATAGAG GTGGAGCTGG TTCAGCGTCA ACGTGGCTTA AGCCTAGTAC GCGGGGATGA GTTGGATAAG GCGCGGCAGG CACAACAGAA AGTGGTGATT GAGGGGGCGT TTTTCTTGGC ATCGGAGCAG GCCAAAGCTG GCTTTGATAT TCATGCCCAC TAA
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Protein sequence | MNSITQKSIF HSFSTVSATG LRSLFTPSRL ALALMLTSLT ITAPTFAGEG HDHGAEKVAN TAEKSVSATE DDHGEQALTL TPAQLELAGI RLLPLSSDSL SLSNLNLDTM ATATLVVDRD RTATLAPQLD VRVQARHVVP GQEVKKGEPL LTLGGAEVAK AQAEYINAAA EWNRVRRMSE SAVSVSRRMQ AQVDAELKRA ILEAIKMTAE QIRTLESTPE AIGSYQLLAP IDGRVQQDIA MLGQVFTAGT PLMQLTDESH LWVEAQLTPA QAANVNAGGP ALVQVGDKTL AGKIIGRSHE LDSVTRTEQI LVSMPNPEHV LHAGQFAELY FADAPASADG AASSSGFSSG IVLPDAALTR GGDGDWQIFV QDEDGFEAIE VELVQRQRGL SLVRGDELDK ARQAQQKVVI EGAFFLASEQ AKAGFDIHAH
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