Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_0460 |
Symbol | |
ID | 4250795 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 522099 |
End bp | 524132 |
Gene Length | 2034 bp |
Protein Length | 677 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 638117019 |
Product | TRAP transporter, 4TM/12TM fusion protein |
Protein accession | YP_732597 |
Protein GI | 113968804 |
COG category | [R] General function prediction only |
COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGATT CCGAACAAGG ACTAGGCGCT AAGACCAGTG ACTGGCCCAA GGCGCTGTTT TACACCGCGC TACTTTTCTC TATTTTTCAA ATCATTACCG CCGCCTTTCA TCCCGTATCG ACCCAAGTTT TGCGGGCAAC CCACGTGGGC TTTTTACTCT TAGTCGTATT CTTGAGTTAT CCGGCGGTGG GCAAGTCTCG CCCCTGGCAA CCCTTAGCCT GGGTGCTTGG CCTTGCGGGC ATGGCAACGG CCGCCTATCA ATGGTTTTTT GAGGCCGACT TGATCCAGCG CTCCGGTGAA CTCACCGATG CCGATATGGT AATTGGCGTG GTGTTGATTG TTTTAGTGTT TGAAGCCGCG CGGCGGGTGA TGGGCTGGGC GCTGCCGATT ATCTGCTGTA TTTTCTTGGC CTACGGCTTA TTCGGCCAAT ATCTCCCCGG TGACTTAATG CACCGTGGCT ACGGCGTTGA CCAAATTATC AATCAGTTAT CCTTCGGTAC CGAAGGGCTC TACGGCACAC CAACCTATGT GTCGGCTACC TATATCTTCC TGTTTATTCT CTTTGGTGCA TTTTTAGAGC AAGCGGGGAT GATCCGTCTG TTTACCGATT TTGCCATGGG ATTATTCGGC CATAAACTCG GCGGCCCGGC GAAAGTGGCC GTGGTTTCTT CGGCGATGAT GGGCACAATC ACGGGCTCGG GAGTTGCCAA CGTGGTGACC ACGGGGCAAT TTACCATTCC CTTGATGAAG CGCTTCGGCT ACCGCCCCGC CTTTGCCGGC GGTGTAGAAG CCACTTCCAG TATGGGCAGC CAAATTATGC CGCCCATCAT GGGCGCGGTG GCCTTTATCA TGGCCGAAAC CATTAACGTG CCGTTTATTG AAATCGCCAA AGCGGCGTTA ATCCCCGCAT TGTTGTATTT CAGCTCAGTG TTCTGGATGG TGCATCTGGA GGCCAAACGC GCCAATCTCT GTGGTTTGCC TAAGGATCAA TGCCCCGATC CCTGGGCGGC AGTGAAGGAG CGCTGGTATC TGCTGATCCC ACTGTTTATT TTGATTTACT TGCTGTTTTC GGGTCGTACG CCGCTGTTTT CTGGCATGGT CGGTTTAGCA CTAACTTCGA TTGTGATCTT AGGCTCTGCG ATTGTGCTGC GCCTACCTTC TAATGCGATG CGCTTCGCCT TTTGGATTGC CCTTGGGGTG TTGTGTGCCG GCTTCTTCCA GATGGGAATC GCCGTCGTCT TTGGGGTCAT CGCCTTACTC GTCGCTGTCT GCTGGTTTAT CAAAGGGGGT AAAGATACCC TGACCATCTG CCTGCACGCT TTAGTCGATG GCGCTCGCCA TGCGGTGCCC GTGGGGATTG CCTGCGCCCT GGTTGGGGTG ATTATCGGGA TCGTCTCGCT GACGGGGATT GCCTCAACCT TCGCCAGTTA CATCCTCGCC GTGGGTCAAG ATAACCTCTT CCTCTCATTG GTGTTAACTA TGCTCACCTG CATGGTGTTA GGCATGGGCA TCCCGAGTAT CCCTAACTAT ATTATTACCA GCTCGATTGC CGCCCCCGCG CTGCTGGACT TAGGTGTGCC GCTGATCGTC TCCCATATGT TTGTGTTTTA TTTTGGAATT ATGGCCGACC TCACGCCTCC CGTCGCCTTG GCCTGCTTTG CCGCTGCGCC AATCGCAAAA GAATCGGGGC TGAAGATCAG TCTATGGGCG ATTCGCATCG CTATCGCTGG CTTTGTGATC CCCTTTATGG CGGTTTACGA TCCGGCGCTT ATGCTACAAA GCGATAGCTG GCTTGCCATC GGCTTTGTGA TGTTAAAAGC CACCGTAGGT ATTGGTATCT GGGGCGTGAT CTTCACCGGT TTCTTACTGC AAAAACTCTA TTGGTGGGAG CGTGTTATCG GCTTCCTCGC CGGAGCCAGT TTAATCCTTG CGACACCGCT CAGTGATGAA ATCGGCTTTG GACTGGCGCT ACTCTTTATC GTGCAGCACA GCCTAAGAGC GCGCAAACTG AAACGTCTTG CCGAGCAGGG GTAA
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Protein sequence | MSDSEQGLGA KTSDWPKALF YTALLFSIFQ IITAAFHPVS TQVLRATHVG FLLLVVFLSY PAVGKSRPWQ PLAWVLGLAG MATAAYQWFF EADLIQRSGE LTDADMVIGV VLIVLVFEAA RRVMGWALPI ICCIFLAYGL FGQYLPGDLM HRGYGVDQII NQLSFGTEGL YGTPTYVSAT YIFLFILFGA FLEQAGMIRL FTDFAMGLFG HKLGGPAKVA VVSSAMMGTI TGSGVANVVT TGQFTIPLMK RFGYRPAFAG GVEATSSMGS QIMPPIMGAV AFIMAETINV PFIEIAKAAL IPALLYFSSV FWMVHLEAKR ANLCGLPKDQ CPDPWAAVKE RWYLLIPLFI LIYLLFSGRT PLFSGMVGLA LTSIVILGSA IVLRLPSNAM RFAFWIALGV LCAGFFQMGI AVVFGVIALL VAVCWFIKGG KDTLTICLHA LVDGARHAVP VGIACALVGV IIGIVSLTGI ASTFASYILA VGQDNLFLSL VLTMLTCMVL GMGIPSIPNY IITSSIAAPA LLDLGVPLIV SHMFVFYFGI MADLTPPVAL ACFAAAPIAK ESGLKISLWA IRIAIAGFVI PFMAVYDPAL MLQSDSWLAI GFVMLKATVG IGIWGVIFTG FLLQKLYWWE RVIGFLAGAS LILATPLSDE IGFGLALLFI VQHSLRARKL KRLAEQG
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