| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0429 |
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| Symbol | |
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| ID | 4251903 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 478098 |
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| End bp | 480119 |
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| Gene Length | 2022 bp |
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| Protein Length | 673 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 638116988 |
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| Product | pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase |
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| Protein accession | YP_732566 |
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| Protein GI | 113968773 |
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| COG category | [C] Energy production and conversion
[I] Lipid transport and metabolism |
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| COG ID | [COG0508] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes
[COG0511] Biotin carboxyl carrier protein |
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| TIGRFAM ID | [TIGR01348] pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0849559 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGAAT TAAAAGAAGT TTTTGTTCCT GATATCGGCG GCGATGAAGT ACAGGTTATC
GAAATCTGTG CTTCTGTGGG CGATACCTTA GCAGCGGAAG AGTCGATTCT GACCGTTGAA
AGCGACAAGG CGACCATGGA CATTCCTGCG CCTTTCGCGG GTGTGTTAGC CGAATTGAAA
GTGGCCGTCG GTGACAAAGT CAGCGAAGGT ACTTTAATTG CGATGATGCA AGCAGCGGGC
ACGGCTAATG TTCAAGCTGC GCCTGTTGCT CAAGCTGCCG CTCCTGCGCC AGCCCCAGCA
GCACCTGCAC CAGTACAAGC GGCTCCAGCC CCTGTGGCTG CCGCGCCAGC GACGGGCGCA
ACCCAAGTGG TTGAAGTTAC TGTGCCGGAT ATCGGTGGTG ACACCGATGT GTCTGTTATC
GAAGTCTTAG TTGCCGCTGG CGATAAGATT GAGGTTGACG CTGGCCTTAT CACGCTTGAA
ACCGACAAAG CGACCATGGA CGTACCATCG CCATTCGCGG GTGTGGTAAA AGAAGTGAAA
GTGGCAGTGG GTGACAAGGT TTCTCAAGGC TCATTAGTGA TCATGCTCGA AGTGGGCGGC
GCGGCACCTG CTGCAGCGCC ACAAGCGAGC GCGCCAGCAG CCTCTGCACC TGTCGCTCAA
GCGGCTCCTG CTGCGCCAGT TGCTCCAGTC GCCGCTGCAG CACCAGTGGT TGCGGTTAAA
GAAATCCAAG TGCCTGATAT TGGCGATGCG AGCAATGTCG ATGTGATCGA AGTGCTCGTG
TCTGTGGGCG ATGACATTAC AGTTGATCAA GGTTTAATTA CCCTTGAAAC CGATAAAGCG
ACCATGGAAG TACCAGCGCC ATTCGCCGGT AAACTGTTGT CGTTAACCGT TAAAGTGGGT
GACAAGGTTT CTCAAGGTAG CGTGATTGCG ACGATTGAAA CTGTGACAGC AGGCAGTGCG
CCAGCGCCAG TAGCTCAAGC CGCAGCACCT GCACCAGTTG CCCAAGAAGC GGCACCGGCA
CCTGTTGCTG CCGCTCCTAG CCGTCCACCA GTTCCACATC ACCCAAGTGC GGGTGCGCCA
GTGGCAACCG GTGTGGTTCA TGCGTCTCCA GCGGTTCGTC GTTTGGCCCG TGAATTTGGT
GTGGACCTTA CTCAAGTGAC GGGTTCAGGC CGTAAAGGTC GCATCATGAA GGAAGACGTA
CAGGCGTATG TGAAGTACGA ACTGTCTCGT CCTAAGGCGA CAGCAGCAAC TTCAGTTGCA
ACGGGTAACG GTGGTGGTCT GCAAGTGATT GCTGCACCGA AAGTGGATTT CAGCAAGTTT
GGTGAAGTGG AAGAGATTCC ATTGAGCCGT ATCCAGAAGA TCTCTGGTCC AAACCTGCAC
CGCAACTGGG TAACTATTCC TCACGTGACT CAGTTCGATG AAGCTGATAT CACCGAAATG
GAAGAGTTCC GTAAGCAGCA GAACGACGCG GCGGCGAAGA AAAAAGCCGA TTATAAGATC
ACTCCGCTGG TCTTTATGAT GAAAGCCGTG GCGAAAACGC TGCAACAGTT CCCAGTGTTC
AACTCAAGCT TAAGCAGCGA CGGTGAATCA CTGATCCAGA AGAAGTACTA CCACATCGGT
GTGGCGGTTG ATACGCCAAA CGGTCTAGTG GTACCTGTGG TACGTGACGT GGATAAGAAA
GGCATCATCG AGTTATCTCG TGAGCTGGCC GATATTTCTG TCCGTGCCCG TGACGGTAAG
CTCAAATCTG CCGATATGCA GGGCAGCTGC TTCACTATTT CAAGCCTAGG TGGCATTGGT
GGTACTGCGT TTACCCCAAT CGTTAACTAC CCAGACGTGG CGATTTTAGG TGTGTCTAAA
TCTGAAATTA AGCCTAAATG GAATGGTAAA GAGTTCGAGC CTAAATTGAT GTTGCCACTG
TCGCTATCAT ACGATCACCG CGTGATCGAT GGTGCTATGG CTGCACGCTT TAGCGTGACC
CTGTCAGGAA TTCTGTCCGA TATTCGTACT TTGATTCTGT AA
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| Protein sequence | MAELKEVFVP DIGGDEVQVI EICASVGDTL AAEESILTVE SDKATMDIPA PFAGVLAELK
VAVGDKVSEG TLIAMMQAAG TANVQAAPVA QAAAPAPAPA APAPVQAAPA PVAAAPATGA
TQVVEVTVPD IGGDTDVSVI EVLVAAGDKI EVDAGLITLE TDKATMDVPS PFAGVVKEVK
VAVGDKVSQG SLVIMLEVGG AAPAAAPQAS APAASAPVAQ AAPAAPVAPV AAAAPVVAVK
EIQVPDIGDA SNVDVIEVLV SVGDDITVDQ GLITLETDKA TMEVPAPFAG KLLSLTVKVG
DKVSQGSVIA TIETVTAGSA PAPVAQAAAP APVAQEAAPA PVAAAPSRPP VPHHPSAGAP
VATGVVHASP AVRRLAREFG VDLTQVTGSG RKGRIMKEDV QAYVKYELSR PKATAATSVA
TGNGGGLQVI AAPKVDFSKF GEVEEIPLSR IQKISGPNLH RNWVTIPHVT QFDEADITEM
EEFRKQQNDA AAKKKADYKI TPLVFMMKAV AKTLQQFPVF NSSLSSDGES LIQKKYYHIG
VAVDTPNGLV VPVVRDVDKK GIIELSRELA DISVRARDGK LKSADMQGSC FTISSLGGIG
GTAFTPIVNY PDVAILGVSK SEIKPKWNGK EFEPKLMLPL SLSYDHRVID GAMAARFSVT
LSGILSDIRT LIL
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