| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0382 |
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| Symbol | |
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| ID | 4251943 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 411292 |
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| End bp | 412674 |
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| Gene Length | 1383 bp |
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| Protein Length | 460 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638116941 |
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| Product | HlyD family type I secretion membrane fusion protein |
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| Protein accession | YP_732519 |
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| Protein GI | 113968726 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTAAAA ATCTAACCGC ACACGATTTA GACATGGTGG ATGATGTTTA TGGTGCAATG
ATGACTGATG CCCCTAGTGG ACACCGACTC ATCATCTGGG CCTTAGCTGC TATGGTGGTC
TGCTTCCTGT TATGGGCAGG TTTTGCCCAG TTGGATAAGG TCACCACAGG TTCGGGTAAG
GTGATACCCT CTTCGCAAGT GCAAGTGATC CAGAGTCTCG ACGGTGGGAT CATGCAGGAA
CTCTACGTGC GAGAAGGGGA TATAGTGACT AAGGGACAAC CCTTAGTTCG CATCGATGAC
ACTCGTTTTC GCTCCGATTT CGCACAACAA GAGCAAGAGG TTTTTGGTTT AAAAACCAAT
GTTATCCGTA TGCGTGCCGA GTTGGATAGC ATACTGATAT CAGACATGAC ATCTGATTGG
CGTGAGCAAG TTAAAATCAC CAAAAAAGCC TTAGTCTTCC CCGAAAGCCT GACAGAGGCA
GAGCCCGCGT TGGTGAAAAG ACAGCAAGAA GAGTACAACG GCCGTTTAGA CAATCTGAGT
AACCAGTTGG AAATTCTGGT GCGTCAAATC CAGCAAAGAC AACAGGAAAT TGATGATCTC
GCCTCAAAAA CCACGACCCT GACAACGAGT ATGCAACTGA TTTCGAGGGA ACTCGAACTC
ACTCGACCAC TCGCCAAAAA GGGCATCGTG CCCGAAGTCG AATTACTCAA ATTAGAACGT
GCCGTTAACG ATGCCCAAGG TGAGCTAAAC TCCTTACGAT TACTCAGACC TAAGCTGAAG
GCTGCATTAG ACGAAGCCAT TCTCAAACGC CGTGAAGCTG TATTTGTCTA TGCAGCCGAT
CTACGCGCCC AACTTAACGA AACTCAAACT CGCTTATCAC GCATGAATGA AGCCCAAGTC
GGGGCACAGG ATAAGGTGAG TAAAGCCATT ATTACTTCTC CCGTTAACGG CACCATCAAG
TCTGTGCATA TCAATACCTT AGGCGGGGTT GTCCAGCCTG GCGTCGATAT TGTAGAAATC
GTTCCTTCAG AAGATCAGTT GCTAATAGAA ACGAAAATCC TGCCAAAGGA TATCGCGTTT
CTGCACACGG GATTACCTGC AGTGGTGAAA GTCACAGCCT ACGATTTTAC GCGCTACGGC
GGCCTAAAAG GTACAGTTGA GCATATTAGT GCTGATACTT CACAGGACGA AGAAGGAAAT
AGCTTCTACC TTATAAAGGT GAGAACAGAA GAATCCAGTT TAGTAAAAGA CGATGGCACA
CAGATGCCAA TTATCCCGGG GATGTTAACA ACCGTTGATG TCATCACCGG ACAAAGATCC
ATTCTTGAGT ACATTTTAAA TCCAATTTTA AGGGCTAAGG ATACCGCGCT CAGAGAGCGT
TAA
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| Protein sequence | MSKNLTAHDL DMVDDVYGAM MTDAPSGHRL IIWALAAMVV CFLLWAGFAQ LDKVTTGSGK
VIPSSQVQVI QSLDGGIMQE LYVREGDIVT KGQPLVRIDD TRFRSDFAQQ EQEVFGLKTN
VIRMRAELDS ILISDMTSDW REQVKITKKA LVFPESLTEA EPALVKRQQE EYNGRLDNLS
NQLEILVRQI QQRQQEIDDL ASKTTTLTTS MQLISRELEL TRPLAKKGIV PEVELLKLER
AVNDAQGELN SLRLLRPKLK AALDEAILKR REAVFVYAAD LRAQLNETQT RLSRMNEAQV
GAQDKVSKAI ITSPVNGTIK SVHINTLGGV VQPGVDIVEI VPSEDQLLIE TKILPKDIAF
LHTGLPAVVK VTAYDFTRYG GLKGTVEHIS ADTSQDEEGN SFYLIKVRTE ESSLVKDDGT
QMPIIPGMLT TVDVITGQRS ILEYILNPIL RAKDTALRER
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