Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_0126 |
Symbol | |
ID | 4250619 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 142227 |
End bp | 142799 |
Gene Length | 573 bp |
Protein Length | 190 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 638116669 |
Product | chorismate lyase |
Protein accession | YP_732264 |
Protein GI | 113968471 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG3161] 4-hydroxybenzoate synthetase (chorismate lyase) |
TIGRFAM ID | |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.0000000642839 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGTGTGA CCAGCTTAAG CTTTCCCTAT GGCGAATCTA TTCAATGGTT TTGTGCCGAT AACGCCAAAA ATCTTCCCTC TTCTCCCCTC AAAGAATGGT TACTGGCGCC GGGAAGCCTG ACTCAAAAGC TCAAGGGCTG TTGCGATAAG TTCGAAGTCA AAATCCTCGG TGAAGGCCAA TGCGTCCCGC TCGAAGGAGA ATATCCCAAG CAAAACGCCG TTTGGGTACG CGAAGTCTTA CTCTGCCTCG ACTCTGTGCC TTGGGTATTT GCTAGAACCT TGATCCCTCA GTCTTTATTA TCGACCCGCC AAGCTGATTT TTTAGGCCTA GGTACACGTC CACTCGGTGA ATTATTGTTT AGCCAAGATA GTTTTGTGCC TGGTCGCATC GAAATCGCCC GCTTTACCAC CGAGAGTCGC CTCGCCCAGC TCGCTCAGAG TTTAGCGCAA AATGTCGAAC ACGAGCTCTG GGGCCGACGT CGATATTTTC ACCATGACCA GGAGGAAATG TTTGTCAGCG AAATGTTCCT CCCGGCCGCA GTACAAGCGA TGGCTAAGTT AAAACTAGAC TAA
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Protein sequence | MSVTSLSFPY GESIQWFCAD NAKNLPSSPL KEWLLAPGSL TQKLKGCCDK FEVKILGEGQ CVPLEGEYPK QNAVWVREVL LCLDSVPWVF ARTLIPQSLL STRQADFLGL GTRPLGELLF SQDSFVPGRI EIARFTTESR LAQLAQSLAQ NVEHELWGRR RYFHHDQEEM FVSEMFLPAA VQAMAKLKLD
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