Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_0117 |
Symbol | |
ID | 4250996 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 129392 |
End bp | 130660 |
Gene Length | 1269 bp |
Protein Length | 422 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 638116660 |
Product | MscS mechanosensitive ion channel |
Protein accession | YP_732255 |
Protein GI | 113968462 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0668] Small-conductance mechanosensitive channel |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.291896 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGATCAAG AAATTCGCCT TCAAATCTCG AACTGGCTAT CGAGTATCGG GATCGACAGC CAACCATCCG ACGGCATATC GACCAGCATT ATGCTGCTTG CCTGTGTGCT GGTGGCGGCC ATTGCCTATT TTATTATGCG CCGCGGGGTG ATCCGTGCGG TCAACATGGT GATCCTGCGC TCCAAGGCGA CGTGGGACGA CGTATTTATG CGTTACCGGG TGCTGGAAAA GTTGGCAATG TTAGTGCCTG CTATCGTGCT AAACCTTCTG GTGCCTATAA CCTTAACCGA GCATCCCGTA CTCAGCAGTT TAGTCGACCG TCTATTGAGT ATTTGGTTGG TGATCCTGAT GATCCGCGCC ATTTACGCAG GGCTCGATGC GGTTAATGAG ATTTCCGATG TCAATTTGGT CAGCCGCCGC TTGCCGGTAA AAAGCTTTGT GCAGCTGATT AAACTGTTTC TGTTCTTTGT CGGTCTGATC GTGTCGATTT CTGTACTGGC GGATCAATCA CCCGTGTACT TCCTCAGCGG TTTAGGTGTG GCAACGGGTT TTGTGATGTT AGTGTTCCGC GACACCATTT TAGGCTTCGT GGCGGGGATC CAGCTGGCGG CTAACCGTAT GGTCAGCAAG GGCGACTGGA TCCAGATGGA CAAATACGGC GCCGACGGTG CGGTGGAGGA AGTGTCCTTA ACTACGGTCA AAGTGCGTAA CTGGGACAAG ACCATCACTA TGATCCCCGC CTATGCCTTA GTGTCGGATG CGTTTCGTAA CTGGCGAGGT ATGTCGGAGT CGGGCGGTCG CCGTATCAAG CGTGCGGTCA ATATCGATAT CAACAGCATT AAGTTTTTAA CCGAGGAAGA GCGTAGTCGA CTCAGTAAAA TCAATTGCTT GAAAGAATAT TTCCCTGCCA AGATCAGTGA GATCCAAGAG TCGAATGCCA AAGTGTCGGA TCTGGATATG AAGGTCAATG GCCGCCATCT GACCAACGTT GGTACCTTCC GCGCTTATTT GCAGGAGTAC CTGCAACGCC ATGATAAAGT GCACAAAGAT ATGACACTGA TGGTGCGCCA ACTGGCTCCA ACGACCGAAG GTTTGCCGAT TGAGATTTAT ATCTTTACCA ATGATACACG TTGGGCCTTT TATGAGGCGA TACAAGCGGA TATCTTCGAT CATATCTTTG CCGTGTTGCC CGAATTTGGT TTACAGGCCT TCCAAGCGCC GACGGGCAAC GATATCCGCA GTCTAAAATC GGTGAAAGTC GAGGGCTAA
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Protein sequence | MDQEIRLQIS NWLSSIGIDS QPSDGISTSI MLLACVLVAA IAYFIMRRGV IRAVNMVILR SKATWDDVFM RYRVLEKLAM LVPAIVLNLL VPITLTEHPV LSSLVDRLLS IWLVILMIRA IYAGLDAVNE ISDVNLVSRR LPVKSFVQLI KLFLFFVGLI VSISVLADQS PVYFLSGLGV ATGFVMLVFR DTILGFVAGI QLAANRMVSK GDWIQMDKYG ADGAVEEVSL TTVKVRNWDK TITMIPAYAL VSDAFRNWRG MSESGGRRIK RAVNIDINSI KFLTEEERSR LSKINCLKEY FPAKISEIQE SNAKVSDLDM KVNGRHLTNV GTFRAYLQEY LQRHDKVHKD MTLMVRQLAP TTEGLPIEIY IFTNDTRWAF YEAIQADIFD HIFAVLPEFG LQAFQAPTGN DIRSLKSVKV EG
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