Gene Shewmr4_0117 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0117 
Symbol 
ID4250996 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp129392 
End bp130660 
Gene Length1269 bp 
Protein Length422 aa 
Translation table11 
GC content51% 
IMG OID638116660 
ProductMscS mechanosensitive ion channel 
Protein accessionYP_732255 
Protein GI113968462 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0668] Small-conductance mechanosensitive channel 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.291896 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGATCAAG AAATTCGCCT TCAAATCTCG AACTGGCTAT CGAGTATCGG GATCGACAGC 
CAACCATCCG ACGGCATATC GACCAGCATT ATGCTGCTTG CCTGTGTGCT GGTGGCGGCC
ATTGCCTATT TTATTATGCG CCGCGGGGTG ATCCGTGCGG TCAACATGGT GATCCTGCGC
TCCAAGGCGA CGTGGGACGA CGTATTTATG CGTTACCGGG TGCTGGAAAA GTTGGCAATG
TTAGTGCCTG CTATCGTGCT AAACCTTCTG GTGCCTATAA CCTTAACCGA GCATCCCGTA
CTCAGCAGTT TAGTCGACCG TCTATTGAGT ATTTGGTTGG TGATCCTGAT GATCCGCGCC
ATTTACGCAG GGCTCGATGC GGTTAATGAG ATTTCCGATG TCAATTTGGT CAGCCGCCGC
TTGCCGGTAA AAAGCTTTGT GCAGCTGATT AAACTGTTTC TGTTCTTTGT CGGTCTGATC
GTGTCGATTT CTGTACTGGC GGATCAATCA CCCGTGTACT TCCTCAGCGG TTTAGGTGTG
GCAACGGGTT TTGTGATGTT AGTGTTCCGC GACACCATTT TAGGCTTCGT GGCGGGGATC
CAGCTGGCGG CTAACCGTAT GGTCAGCAAG GGCGACTGGA TCCAGATGGA CAAATACGGC
GCCGACGGTG CGGTGGAGGA AGTGTCCTTA ACTACGGTCA AAGTGCGTAA CTGGGACAAG
ACCATCACTA TGATCCCCGC CTATGCCTTA GTGTCGGATG CGTTTCGTAA CTGGCGAGGT
ATGTCGGAGT CGGGCGGTCG CCGTATCAAG CGTGCGGTCA ATATCGATAT CAACAGCATT
AAGTTTTTAA CCGAGGAAGA GCGTAGTCGA CTCAGTAAAA TCAATTGCTT GAAAGAATAT
TTCCCTGCCA AGATCAGTGA GATCCAAGAG TCGAATGCCA AAGTGTCGGA TCTGGATATG
AAGGTCAATG GCCGCCATCT GACCAACGTT GGTACCTTCC GCGCTTATTT GCAGGAGTAC
CTGCAACGCC ATGATAAAGT GCACAAAGAT ATGACACTGA TGGTGCGCCA ACTGGCTCCA
ACGACCGAAG GTTTGCCGAT TGAGATTTAT ATCTTTACCA ATGATACACG TTGGGCCTTT
TATGAGGCGA TACAAGCGGA TATCTTCGAT CATATCTTTG CCGTGTTGCC CGAATTTGGT
TTACAGGCCT TCCAAGCGCC GACGGGCAAC GATATCCGCA GTCTAAAATC GGTGAAAGTC
GAGGGCTAA
 
Protein sequence
MDQEIRLQIS NWLSSIGIDS QPSDGISTSI MLLACVLVAA IAYFIMRRGV IRAVNMVILR 
SKATWDDVFM RYRVLEKLAM LVPAIVLNLL VPITLTEHPV LSSLVDRLLS IWLVILMIRA
IYAGLDAVNE ISDVNLVSRR LPVKSFVQLI KLFLFFVGLI VSISVLADQS PVYFLSGLGV
ATGFVMLVFR DTILGFVAGI QLAANRMVSK GDWIQMDKYG ADGAVEEVSL TTVKVRNWDK
TITMIPAYAL VSDAFRNWRG MSESGGRRIK RAVNIDINSI KFLTEEERSR LSKINCLKEY
FPAKISEIQE SNAKVSDLDM KVNGRHLTNV GTFRAYLQEY LQRHDKVHKD MTLMVRQLAP
TTEGLPIEIY IFTNDTRWAF YEAIQADIFD HIFAVLPEFG LQAFQAPTGN DIRSLKSVKV
EG