Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_0066 |
Symbol | |
ID | 4250945 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 77389 |
End bp | 79785 |
Gene Length | 2397 bp |
Protein Length | 798 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 638116608 |
Product | TonB-dependent receptor |
Protein accession | YP_732204 |
Protein GI | 113968411 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.000206959 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.0000000155765 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATAAATC GCACATCACA ACAATTCTTG TTAAGTACCA TCGCCGTCTT GGTGAGTTCT CAGCTTTGGG CTGCCGATGC ACCCGCGCAG GAAGAAACCA AGAAAGATGC GTTAGGCCTC GAGCGTATTA CCGTTACGGG CGTTGCTCGT GGTACCCGCG TCATGGACTC GAGCGTGTCA GTTAGCAGCG TATCACTCGC CGAGTTGGAG GTTAGTACTC CCCGTTCATC TGCCGAAGCA TTCCGGATCA TTCCGGGGAT GAAGGTGGAA TCAACGGGTG GTGAAGGTAA CGCTAACATT GCTGTCCGTG GCTTACCTGT GGCATCGGGC GGTGCTAAGT TTCTTCAAAT CCAAGAAGAT GGATTACCTA TTCTGCAGTT TGGCGATATT GCCTTTGGTA ATGCGGATAT CTTCTTACGC TTAGATTCTA CAGTGCAAAC CATTGAATCG ATTCGCGGTG GTTCGGCGTC TACTGCGGCC AGTAATGCTC CCGGCGGTAT TATTAACGTG ATCAGTAAAA CTGGTAGCTC GGATGCTGGC AGCGTGTCTA CCACCTTTGG CTTGGACTAC GATACCTTCC GCACCGACTT TGAATATGGC ACGAGTATCA ATGACAGCCT GCGTTTCCAT GTGGGGGGAT TTGTGCGGAC TGGCGAAGGT CCTCGCCAAG CTGGTTATGA TGCCAACAAG GGCGGCCAGG TAAAAGCCAA CATTACCAAA GAGTTCGATA GTGGCTATGT TCGTCTTTAT TTTAAACACT TAGATGATAA GAGTATTGGC TACTTACCCA TGCCAATGTA TTCGGACGGT AGTTCTGTCC CAGGTTTTAA TGCGAAATCC GATGCCATTC AATCAGCTTA TTTCCTCTCA ACCCTGAGTT TAGGTGCCGA TGGTGAGCGT CGTCGTGGTG ATATGCGCGA TGGTATGAAT CCTGAGGTTA ACTCTGTGGG ATTAGAAGCG TCTTTTGATT TGGGCAATGA TTGGCAAGTC GAAAACCGTT TCCGTTTCTC GGATGTGAGC GGTAATTTTA TGGCGCCATT CCCTGCCGAA GTGGCTAATG GAGCCGACAT TGCGGCCAGT ATTGCCGGCA CTGGCGCCAA GTTGATTTAT GCCAATGGTC CCGATGCGGG CAATCCTATG GATGGACTCG CCATGCGTAT CCATACCTTC GACGTCAAGA TGAATGACTT TGGCTCAATC GTAAACGACT TAAAATTAAC GAAAACTTTT GACGATACCA GCGTTACTCT GGGTTATTAC AATGCCACCC AAAATATCAA TATGACCTGG ATGTGGAACT CCTATCTGAT GGAAGTCAAA GGGGATAACG CCGCATTGCT CGATGTGGTG GCCGCCGATG GTACCGCCTA TTCCGATGCT GGGCTCTACG GCTATGGTGT GCCTTATTGG GGCAACTGTT GCCAACGTAA TTACGATACC GAATACAACA TTAAGGCGCC TTATCTTGCG GTAGCGTCAA GCTTTGGGGA TTTGTCGCTG GATGCCAGTG TGCGGTACGA CAGCGGTGAT GCCAGTGGTT ACTACGCAGG TAATGTGCAA TCGCAAGTGG ATATGAACTT GGATGGCGTT ATCTCTATTC CTGAGCAGAG CGTCTCTTCT ATCGATAATG CCAATCCGCA ACCTGTGAAT TATGACTGGA GCTACACCTC CTATTCACTC GGCGCAAATT ATCAGTTTGA CAGTGATTTA GCCGCCTTTG GTCGCTTGAG TCATGGTGGC CGCGCCAATG CGGATCGCCT GTTATTTGGT AAGGTTCGTG CCGATGGTTC AGTGGCAAAA GAAGACGCTG TCGATAATGT GGATCAATAT GAGTTAGGCG TTAAGTACCG TTACGATGAT TTATCTGTGT TCGCGACCGC TTTCTATTCA GAGACCGAAG AGCAAAACTT CGAGGCGACC AGTCAGCGTT TCTTCGACCG TAAGTACAAA GCCAAAGGTA TTGAAATTGA ATCGGCCTAT TTTATCGGTG ACTTCGATTT TAGGGGCAAT GTCACTTGGA CCGACGCTGA AATTGCCAAG GATGCGTTAA CGCCAGACGT TGTGGGGAAT ACCCCAAGAA GACAGGCCGA CTTTATCTAC TCGCTGATGG GCCGTTATAA CTTTGACCAA GGCTCAGTGG GCATCAACCT GATTGGTACC ACTGACTCCT ATGCACAGGA TAATAATGAT CTCAAGTTTG ATGGTTACAA TCAGGTCAAT GCCTTTGCAA CCTACAACTT GACTCAGGCC TTAAGCGTCT CGTTAAACGT CAACAACCTG TTTGACGCCA CGGGTATCAC CGAAGCTGAA GAGGGTTCGA TTCCTGATAA CAATATTATC CGTGCTCGCA CCATTAATGG CAGAACCACG AGTGCAACCT TGAGATACGA GTTTTAA
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Protein sequence | MINRTSQQFL LSTIAVLVSS QLWAADAPAQ EETKKDALGL ERITVTGVAR GTRVMDSSVS VSSVSLAELE VSTPRSSAEA FRIIPGMKVE STGGEGNANI AVRGLPVASG GAKFLQIQED GLPILQFGDI AFGNADIFLR LDSTVQTIES IRGGSASTAA SNAPGGIINV ISKTGSSDAG SVSTTFGLDY DTFRTDFEYG TSINDSLRFH VGGFVRTGEG PRQAGYDANK GGQVKANITK EFDSGYVRLY FKHLDDKSIG YLPMPMYSDG SSVPGFNAKS DAIQSAYFLS TLSLGADGER RRGDMRDGMN PEVNSVGLEA SFDLGNDWQV ENRFRFSDVS GNFMAPFPAE VANGADIAAS IAGTGAKLIY ANGPDAGNPM DGLAMRIHTF DVKMNDFGSI VNDLKLTKTF DDTSVTLGYY NATQNINMTW MWNSYLMEVK GDNAALLDVV AADGTAYSDA GLYGYGVPYW GNCCQRNYDT EYNIKAPYLA VASSFGDLSL DASVRYDSGD ASGYYAGNVQ SQVDMNLDGV ISIPEQSVSS IDNANPQPVN YDWSYTSYSL GANYQFDSDL AAFGRLSHGG RANADRLLFG KVRADGSVAK EDAVDNVDQY ELGVKYRYDD LSVFATAFYS ETEEQNFEAT SQRFFDRKYK AKGIEIESAY FIGDFDFRGN VTWTDAEIAK DALTPDVVGN TPRRQADFIY SLMGRYNFDQ GSVGINLIGT TDSYAQDNND LKFDGYNQVN AFATYNLTQA LSVSLNVNNL FDATGITEAE EGSIPDNNII RARTINGRTT SATLRYEF
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