| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_4149 |
|---|
| Symbol | |
|---|
| ID | 4475925 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008573 |
|---|
| Strand | + |
|---|
| Start bp | 10342 |
|---|
| End bp | 11445 |
|---|
| Gene Length | 1104 bp |
|---|
| Protein Length | 367 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 639720507 |
|---|
| Product | IS605 family transposase OrfB |
|---|
| Protein accession | YP_863665 |
|---|
| Protein GI | 117676089 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0675] Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | [TIGR01766] transposase, IS605 OrfB family, central region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.247919 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGAGA TCGCTATTAA ACAACGCTTT TACCCAACGA CTGAACAGGC TCAATTGCTT
GCGCAGACTT CTGGCTGTGT GCGTTTCGTT TACAACGCGA TCCTTAAATG GCGTACCGAC
GCTTTCTACA ACGAAAGCAA AAAGGTTAAC TACAACACGG CAAGCTCTAA GCTGACCGAA
CTCAAGAAGC AAACTGAGTT TGAATGGCTT AACAGCGTGT CGTGTGTACC GCTCCAACAA
TCTTTGCGCC ATCAACAAAC TGCGTTTAAG AACTTCTTTG AAGGAAGGGC GAAGTATCCA
GCCTTTAAGA AGAAGCGCAG CAAGCAAAGC GCAGAATTCA CGAAGTCGGC GTTTAAGTTC
AAAGATGGCA ATATCTACAT TGCCAAGTCC AAACAGCCGC TTGATATTCG CTGGTCGCGT
GAACTTCCTA GCGAACCAAC TACCGTCACT ATCTCGAAAG ACAGTGCAGG CCGCTACTTC
GTGTCTATGC TTTGCCGCTT CGAGCCTAAA CCACTGCCTG TTACCAAAAT GACAACGGGT
ATTGATTTGG GTTTGACCGA CCTTGTGATT ACCGCTGACG GGTTTAAATC TGGCAATCCC
CGCCATACTG CAAAGTACGA GAAGAAATTG GCTCAGGCGC AACGCCGCCT TTCCAAGAAG
AAGAAAGGAA CTGCCAACTT CCACAAAGCC AGAATCAAAG TTGCTCGCAT TCAGGCGAAG
ATTGCCGACT GCCGCCGCGA CTTTACCCAC AAACTCACCA CTACGTTGAT AAACGAAAAC
CAAGTGATTA GCTGTGAGAG TTTGAGCGTT AAAAACATGG TCAAGAATCC GCGACTTGCT
AAGGCCATTG GTGACGCCAA TTGGGGCGAA ATGGTTAGGC ATCTTGAGTA CAAAGCAGAA
TGGCGCGGCA GAACACTTGT CCAGATTGAC AAGTGGTATC CGTCTAGTAA GCGTTGTAAT
TGCTGTGGTC ACGTAGTTGA TTCTCTACCG TTACATATAA GGCATTGGAC TTGTCCAGCG
TGTGAAGCGC GCTTAGACCG TGATACCAAT GCCGCTATTA ATATCAAAGC CGCTGGGCAA
GCGGTGTTAG CTTGTGGAGC GTAA
|
|---|
| Protein sequence | MKEIAIKQRF YPTTEQAQLL AQTSGCVRFV YNAILKWRTD AFYNESKKVN YNTASSKLTE
LKKQTEFEWL NSVSCVPLQQ SLRHQQTAFK NFFEGRAKYP AFKKKRSKQS AEFTKSAFKF
KDGNIYIAKS KQPLDIRWSR ELPSEPTTVT ISKDSAGRYF VSMLCRFEPK PLPVTKMTTG
IDLGLTDLVI TADGFKSGNP RHTAKYEKKL AQAQRRLSKK KKGTANFHKA RIKVARIQAK
IADCRRDFTH KLTTTLINEN QVISCESLSV KNMVKNPRLA KAIGDANWGE MVRHLEYKAE
WRGRTLVQID KWYPSSKRCN CCGHVVDSLP LHIRHWTCPA CEARLDRDTN AAINIKAAGQ
AVLACGA
|
|---|
| |