| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3972 |
|---|
| Symbol | |
|---|
| ID | 4480186 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 4771020 |
|---|
| End bp | 4772708 |
|---|
| Gene Length | 1689 bp |
|---|
| Protein Length | 562 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639728588 |
|---|
| Product | signal recognition particle-docking protein FtsY |
|---|
| Protein accession | YP_871596 |
|---|
| Protein GI | 117922404 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0552] Signal recognition particle GTPase |
|---|
| TIGRFAM ID | [TIGR00064] signal recognition particle-docking protein FtsY |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00124798 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAAGA AAGGTTTTTT CTCCTGGTTT CGTAAAGATA AATCACAAGA TGAGGTTGTC
GAGCAAACCC CAGTCTCTAC TCCATCGCAA ACCGAGCAAG CCGAAGCATT AGCAAAGCAG
CAAGCTGAAG AAGCCCGTCT CGCGGCTGAA AAAGCGGCAG CCGAGCAGGC GCTAGCCGAC
AAATTAGCGG CCGAAAAAGC CGAAGCGGAA AGAATTGCTG CGGAACAAGC AGCAAAAGCT
CAAGCAGAAG CGCAGCGTGT TGCTGAAGAG CAAGCTGCAA GTTTAGCCGA ACAACAGGCA
GCAGAAGCCG CGCGTTTAGC GGCGGAGCAA GCGGAAGCGC AGCGTATTGC TGAAGAGCAA
GCTGCACGTT TAGCCGAACA ACAGGCGGTC GAAGCCGCAC GTTTAGCGGC GGAGCAAGCG
CAGGCAGAAC AGTTAGCTGC AGAAAAAGCC GAAGCAGAAA GAATTGCCGC AGAACAAGCC
GCAAAAGCTC AAGCAGAAGC GCAGCGTGTT GCTGAAGAGC AAGCTGTACG TTTAGCCGAA
CAACAGGCGG TCGAAGCCGC ACGTTTAGCG GCGGAGCAAG CGCAGGCAGA ACAGTTAGCT
GCTGAAAAAG CCGAAGCAGA AAGAATTGCC GCAGAACAGG CCGCAGCAGC CCAAGCAGAA
GCCGAAGCCC AAGCAGAAGC TGAGCGAATT GCCGCAGCGC AGATCCAAGC TGAACAACCC
CTTGAGCAAC AACCCGAACC TCAGGCAAAA CCCGCCAAAG AAAGCTTCTT CGCGCGCCTA
AAACGCGGCC TGATGCGCAC TAGCGAAAAT ATTGGTAGCG GTTTCATCGG GTTATTCCGT
GGTAAAAAAA TCGATGATGA TCTGTTTGAA GAGTTGGAAG AGCAGCTATT AATCGCCGAC
GTGGGTGTTG AAACCACTTC ACGCTTGATT AAAAGCCTGA CCGAACATGC GTCCCGCAAG
CAATTAAAGG ATGCCGAAGC ACTCTACGAA CTGCTGCGTG ATGAAATGCA AAAGACGCTC
GATCCTGTTG CTATCCCTTT AGTGCCTGAA AATGCTAACG GCCCCTATGT GATTTTAATG
GTTGGCGTTA ACGGCGTGGG TAAAACCACC ACAATCGGCA AACTGGCGAA GCAATATCAG
CGTCAGGGTA AGACTGTGAT GTTAGCGGCT GGCGATACCT TCCGTGCAGC AGCCGTCGAG
CAATTACAGG TTTGGGGTCA ACGCAATAAC ATTCCCGTGG TGGCTCAGCA TACGGGCGCC
GACAGTGCCT CGGTACTCTT CGATGCGCTG CAAGCGGCTA AGGCCCGTAA GATTGATATC
TTGATTGCCG ACACCGCGGG TCGTCTGCAA AACAAATCGC ACCTAATGGA AGAACTTAAG
AAAGTGGTGC GGGTAATGAA GAAGCTCGAC CCAGAGGCGC CACACGAAGT CATGCTGACC
TTAGATGCGA GCACGGGCCA AAATGCCATT AGCCAAGCGC AGCTATTCCA AGAGGCTGTG
GGCGTCACCG GCATGACCAT CAGCAAGCTC GACGGTACTG CTAAAGGCGG CGTGGTGTTT
GCGATTGCCG ACAAATTTAA AATCCCGCTA CGCTATATTG GCGTGGGTGA GCAAATTGAT
GATTTGCGTA CCTTTAATTC TAAAGAATTT ATTGATGCCT TGTTCACTCA AGAAAAAGCG
GATAGCTAA
|
|---|
| Protein sequence | MAKKGFFSWF RKDKSQDEVV EQTPVSTPSQ TEQAEALAKQ QAEEARLAAE KAAAEQALAD
KLAAEKAEAE RIAAEQAAKA QAEAQRVAEE QAASLAEQQA AEAARLAAEQ AEAQRIAEEQ
AARLAEQQAV EAARLAAEQA QAEQLAAEKA EAERIAAEQA AKAQAEAQRV AEEQAVRLAE
QQAVEAARLA AEQAQAEQLA AEKAEAERIA AEQAAAAQAE AEAQAEAERI AAAQIQAEQP
LEQQPEPQAK PAKESFFARL KRGLMRTSEN IGSGFIGLFR GKKIDDDLFE ELEEQLLIAD
VGVETTSRLI KSLTEHASRK QLKDAEALYE LLRDEMQKTL DPVAIPLVPE NANGPYVILM
VGVNGVGKTT TIGKLAKQYQ RQGKTVMLAA GDTFRAAAVE QLQVWGQRNN IPVVAQHTGA
DSASVLFDAL QAAKARKIDI LIADTAGRLQ NKSHLMEELK KVVRVMKKLD PEAPHEVMLT
LDASTGQNAI SQAQLFQEAV GVTGMTISKL DGTAKGGVVF AIADKFKIPL RYIGVGEQID
DLRTFNSKEF IDALFTQEKA DS
|
|---|
| |