| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3880 |
|---|
| Symbol | |
|---|
| ID | 4480091 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 4660296 |
|---|
| End bp | 4662179 |
|---|
| Gene Length | 1884 bp |
|---|
| Protein Length | 627 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639728493 |
|---|
| Product | LppC family lipoprotein |
|---|
| Protein accession | YP_871504 |
|---|
| Protein GI | 117922312 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3107] Putative lipoprotein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0981735 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTTAAAAA GCCTGAATAC AACTAAGTTC GTTTCCGTGG CCATTTTATC CGCAGTGTTG
GCGGGTTGCG GCAGCCAAGC GCCCAGCTCA ACCGGTACAG CCCCCACAGT GGCCACCTCT
TTAGCCTCTG CTCCATTGGC GCCCAATGTG TATTTAGCAC AGGCCGCGAA TAGCAAAGAT
CCGCAGCAGC GCGACACTAA CCTGCTGCTG GCGGCGCATG CCTATATCAA TGCCAATGAC
TATGCGGCGG CGCAGAAACT GCTGAAGTCG ATGCAGCCAA GCCTGACCCA AACCCCGACT
CTGGTGGCCG AGCATAAATA TCTGACGGCG CGGGTATTAG AGCACACATC GACCTATGTC
GAGGCGCTCA AGACCCTGAG CTATCCAAGC ACTTGGGTGT TACCCGGCTG GCAAATGGCC
GCGTATCATC AATTTAGAGC GCATTTATTC CAGTTGAATA AGCAACCTAT CGAGCAAGTG
CGCGAGCTGA GTTCATTGAC CACCTATTTA CCGCCCGCCG AGGCGAGTGA AGTCAATAAC
CAAATATGGC AGGTGTTGCA GCCAATGCAT GAGCAAACCT TGCAAACCTT TATCCGCGAT
GCCAACAACC CAGTATTTGC TGGTTGGTTG CAGCTCGCCT ATATCGCCAA ACATTATGCG
GTCGACCCTA ATCAACTGGT GCGTTACTTA GGCGACTGGC AAAAGCAGAA TCCTTATCAT
CCTGCGGCGG CCAAATTGCC GACCGATTTG GATCGGGCGC TCAATGCCAA GCCTTTTATG
CCGAAGAATA TCGCCGTCCT GTTACCGCTC ACAGGTCAAC GCGCCAGTGC AGCCAACGCG
ATTCGCCAAG GGATTTTGGC CAGCTATTTA GCCAAACCCA ATGAGCAGGT TGCGGTGAAT
TTTTACGATA CCGCCAATGA TGCCGTCGCC GCCTATCAGC AAGCAGTGAA CGCGGGCGCC
GAGTTTATTA TTGGCCCCTT GCTGCCAAAT GAAATCGATC AATTACTGGC ACTAAACAAC
ACAGCCCCTG CGACCAGCAC GCCAACGGGT ACAGCTCCTG CCGCGCCTAC GGCTCCAATC
GCACCCATCC CGCAGCTGTT TTTAAATCAA ACCGATAAGT TTGTGTCCGA TATCAATAAG
TTCTATTTTG CGCTGTCACC AGCCCAAGAA GCAGCCGATG CCGCAACGCG CATGTATCAA
GATGGCGTGA CCATGCCACT ACTGCTCGCC AGCAACGACG CCATTGGTAA ACGCATGGCA
GAAAGCTTTA TCCAAGCTTG GAAAAAGAAA AGCGATACCC CTATCGAAGT CTATTACTAC
GATGGTGGCG ACAAGATGAA AACCACAGTG CAGGATGCAC TCGGTGTCCG TGATAGCCAA
GCGCGTATCG CGCGGATAAA GGAGCTGCTC GGTAATTCGG TACAAGCCGA TTTTCGTTCG
CGCCAAGATA TCGATGCGAT TTATATGATC TCGACGCCGC AGGATTTAAC CTTGCTCAAG
GCCTTTATCG ATGTGAACTT CAGCGTCTTT ACTCAGCCAG TGCCGCTGTA CACCTCAAGC
CGCAGCCGCA TCGACAACGA ATCGAGCCAA ACGGCGCAGG ATTTAAATAA CCTGACCATG
AGCGATGCAC CTTGGCTAAT GCAAAACAGT GAAGAAAACC TGATGGTTAA CACACTATGG
TCGGGCTGGA ATAACGGCCA AAAACGCCTG TTCGTGATGG GTTATGATGC CATGGATTTG
ATCAGCAAAC TGGCGCAGAT GCGCTCATTC ACGGGTTACC AGTTCAATGG ACGCAGCGGC
GTGTTATCCG TCAATCCTGA CGGCGTGATT AACCGCCAAT TAAGCTGGGG ACGCTATCAA
AGAGGCAGTT TCCGTCAACT ATGA
|
|---|
| Protein sequence | MLKSLNTTKF VSVAILSAVL AGCGSQAPSS TGTAPTVATS LASAPLAPNV YLAQAANSKD
PQQRDTNLLL AAHAYINAND YAAAQKLLKS MQPSLTQTPT LVAEHKYLTA RVLEHTSTYV
EALKTLSYPS TWVLPGWQMA AYHQFRAHLF QLNKQPIEQV RELSSLTTYL PPAEASEVNN
QIWQVLQPMH EQTLQTFIRD ANNPVFAGWL QLAYIAKHYA VDPNQLVRYL GDWQKQNPYH
PAAAKLPTDL DRALNAKPFM PKNIAVLLPL TGQRASAANA IRQGILASYL AKPNEQVAVN
FYDTANDAVA AYQQAVNAGA EFIIGPLLPN EIDQLLALNN TAPATSTPTG TAPAAPTAPI
APIPQLFLNQ TDKFVSDINK FYFALSPAQE AADAATRMYQ DGVTMPLLLA SNDAIGKRMA
ESFIQAWKKK SDTPIEVYYY DGGDKMKTTV QDALGVRDSQ ARIARIKELL GNSVQADFRS
RQDIDAIYMI STPQDLTLLK AFIDVNFSVF TQPVPLYTSS RSRIDNESSQ TAQDLNNLTM
SDAPWLMQNS EENLMVNTLW SGWNNGQKRL FVMGYDAMDL ISKLAQMRSF TGYQFNGRSG
VLSVNPDGVI NRQLSWGRYQ RGSFRQL
|
|---|
| |