Gene Shewana3_3692 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_3692 
Symbol 
ID4479893 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp4432861 
End bp4433865 
Gene Length1005 bp 
Protein Length334 aa 
Translation table11 
GC content48% 
IMG OID639728297 
Productpolysaccharide deacetylase 
Protein accessionYP_871317 
Protein GI117922125 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0726] Predicted xylanase/chitin deacetylase 
TIGRFAM ID[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCCAC GTCGACAATT TTTAAAGACC AGTTTACAGG CGGGTGGTGC CTTGATTGCA 
GGTGTAGGGC TAAGTCAGTC AGCCTTTTCC ATGGGGTTAC CAGGTTTAGT GGCACTCGAT
GATCAAACAC AAACTTCAAT AGGAGGCAGT ATGAATAATC GTTTTTGGCC TAATGGCGAA
CAACTGGTGA TTTCTATCTC CATGCAGTTT GAGGCTGGCG CGCAGGATAA AAACGCCGAA
GGTCCGTTTC CACCAATGGA GCAGGGTTAT CCAGATACTA TTACCCCCAG TTGGTACGAC
TACGGGATGA ATGAGGGGAT ACCGCGTTTG CTACGTTTAT GGCGTAAGCA CAATATTCAG
GTGACCTCCC ACATGGTGGG CCGCGCCGCC GAATTACATC CATTGCTGGC AAAACAAGTG
GCGGATGAAG GCCATGAGAT TTCTGGCCAT GGGCAGACGT GGACGCCGCA ATACAGCATG
TCGCCAGCGC AGGAGCGTGA TTCTTATATC CAGAGTATTA ATACTTTAGA AAAGATCACC
GGCCAGCGTC CCATAGGCTT TAATGCGTTT TGGATGCGCC ATAGCACCCA AACCTTAAAT
ATCCTGCAGG ATCTAGGTTT TATCTATCAT ATTGATGATT TATCAAGGGA TGAGCCTTCA
ATTATCCTTG TGCAGGGTAA ACCGTTTGCC GTGGTGCCTT ATACCTTACG TAACAATGAT
ATAGGTCGCT TTGGTGGCAA TACTGCGATG ACGGCTGCCG CCTTCTTACA AGAGCTTAAA
GATGAATTCG ATATGCTCTA TCAGGAAGGC GCATCCCAGC GGCGGATGAT GTCGATTAGT
TTGCACGACC GTATCGGGGG GACGCCTGGT CTTGCCAATG CCTTAGACAA GTTTATTCAA
TATGCGAAAG CACACTCAAC AGTGGGTTTT ATGCGTAAGG ATGCGATAGC GAAATGGGCG
CTGGCACAAA AGGATACGCC AACCAATCCG GCAAGAACAT TTTAA
 
Protein sequence
MNPRRQFLKT SLQAGGALIA GVGLSQSAFS MGLPGLVALD DQTQTSIGGS MNNRFWPNGE 
QLVISISMQF EAGAQDKNAE GPFPPMEQGY PDTITPSWYD YGMNEGIPRL LRLWRKHNIQ
VTSHMVGRAA ELHPLLAKQV ADEGHEISGH GQTWTPQYSM SPAQERDSYI QSINTLEKIT
GQRPIGFNAF WMRHSTQTLN ILQDLGFIYH IDDLSRDEPS IILVQGKPFA VVPYTLRNND
IGRFGGNTAM TAAAFLQELK DEFDMLYQEG ASQRRMMSIS LHDRIGGTPG LANALDKFIQ
YAKAHSTVGF MRKDAIAKWA LAQKDTPTNP ARTF