Gene Shewana3_3343 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_3343 
Symbol 
ID4477644 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp4012248 
End bp4012991 
Gene Length744 bp 
Protein Length247 aa 
Translation table11 
GC content52% 
IMG OID639727953 
Productlysine decarboxylase transcriptional regulator, CadC 
Protein accessionYP_870973 
Protein GI117921781 
COG category[K] Transcription 
COG ID[COG3710] DNA-binding winged-HTH domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGGTGG GGGGCTGTTG GTTTGACCGT GAGCGTGGCT TACTCGTCGA ACAGGCTCGT 
GATGAATCTT GGCACCTTCC CCGTGCCGAG TTGCAAGTGT TGAGCCTGTT GGTTGAACAT
CAAGGCAAAC TGGTCTCCAA GCATGAGCTG AAGACTGGCG ATGGGGCGCA TCCTCCTCTG
ACTGACACTT CGTTAGCGCG GGCGGTCTTT ATGATCCGCT CCTTCCTCGG ACCCCAATAT
GAGGGGCTGA TTGAAACCGT CAAGGGGCAA GGCTATCTGC TGCACTGTAC CCAAGGGCAA
AAGCTAAAAA GCTTGCGTTA TCCTAGGCTG CAATCCTTAC CTTGGTGGAG TGTGTTGCTG
GTTTTTGGAT TTATGCTCGC GATTTCAGGA TTTTACCTTA GCCGCATCGA CCACAGCGTA
CCGACTCAGC CTTTGCTCTC CACCGATTTG CCCTTAGCCT CGGGTCAACA TATTCGACTG
CATTTGTATG CCAACTCGAA AACCAACAAT ACCCTATTGT TTGAGTTAGG CGACCGCTTA
GGCCAAGGGT TGAGTCGCTG CGGCCATAGT GATTGGTCCG AAGTGTATTC CTCACTCTCC
CACGATAAAC AGGTGCTCAA CATTACTATG CGGGGTTATA AACTCGGGCA ATCGGTGATC
CGCAACTTGA AGATCAGTGA CTTCAGGCGG CCGAAGGAAT TTATCGATGT GAACTGGCTA
CAGGAGGTCG GGATCTGTGG CTAA
 
Protein sequence
MQVGGCWFDR ERGLLVEQAR DESWHLPRAE LQVLSLLVEH QGKLVSKHEL KTGDGAHPPL 
TDTSLARAVF MIRSFLGPQY EGLIETVKGQ GYLLHCTQGQ KLKSLRYPRL QSLPWWSVLL
VFGFMLAISG FYLSRIDHSV PTQPLLSTDL PLASGQHIRL HLYANSKTNN TLLFELGDRL
GQGLSRCGHS DWSEVYSSLS HDKQVLNITM RGYKLGQSVI RNLKISDFRR PKEFIDVNWL
QEVGICG