| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_3259 |
|---|
| Symbol | |
|---|
| ID | 4477368 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 3901143 |
|---|
| End bp | 3902447 |
|---|
| Gene Length | 1305 bp |
|---|
| Protein Length | 434 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 639727869 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_870889 |
|---|
| Protein GI | 117921697 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCTTCT ATTACTTAGA TTTAGCTTGG CGTAGCATCA AAAAAACGCC CATGTTGTCG
GCATTGATGA TCATGGCGAT TTCCATCGGC ATTGGCATCA CTATCACCAC ACTCAATATT
TATAAAATGA TGTCGATTAA CCCCGCGGGG GAGAAATCCG GCCAATTGTT TGCGGTGCAG
CTATGGAGCC AAGGTCCAGA TGCCTGGGAT CGCTTCGATC AACAGATCAC CTATCAAGAC
GGGATGAACT TACTTAAGAG TGATATTCCT AGCCTACAAA CCCCCATGTT TCGCACGGGC
GGCGCGGTGC AAACCGAAGA TCCGGCTTTT TTACCCGTGC TGCAATCTCG AGTGCGGGTG
ACCAATAACG ATTTTTTCCC ACTGTTTGGC CTCGAGTTTC AATATGGTCA GGCGTGGGAT
GACAGTGTTG ATAAGGATGC TCGCTACGAA GTGGTGTTGA CCGATGAGCT GAATAAGACG
CTGTTTGCGG GCCAAAATAG TGTCGGCAAG ACAATTTATT TCAATGCTAA GCCCTATCAG
GTGGTTGGAG TGCTTAAGCC TTGGGCACCA AGTCCAAACT ATTACGACCT TAACAACGGC
GCCTTTGGCA ATGTGGATAC CTTGTTTGTC CCCTACAGCT TAGCGCCGAT TGAGGAATAC
GGCAGTTGGG GGAATACCAA CGGCTGGAAC TATGAAAGCA TCAACACCTA TGCACAGCGT
TTAACTTCGG AAAAGCATTG GACCCAGTAT TGGGTGCAAC TGGATACGCC TGAGCAAGTA
GCTGAGTACC GTCAGTGGGT ACGCCAATAT ATTGAACAAC AAAAGAAATT AGGCCGCTTC
AGCTCACCTA AGGCCGATGT GCAGTTGTCC GATGTTGACC AATGGTTAGC CATCAATAAA
GTGGTGCCGG AGGATAACAA GGTGCTGGTG GGCCTGAGTG CACTCTTCTT AATCGTCTGT
TTAGTCAATA TGTTAGGGTT GTTGCTGTCT AAGTTTTTAC GCCGTGCTCC CGAGATCGGC
GTGCGCCGCG CCATCGGCGC TAGCCAAGGG CAGATCTTTG CCCAACATAT GGTGGAAGTG
TCCTTGATGG GGTTATTCGG CGGTTTACTC GGCTTAGCTT GGGCCTGGGG CTCACTGATG
CTGCTGACCA AGAAGTTTGA CTTGGAGGCG TCTTTAACTC ACCTCGATAC CAGTATGTGG
TTGATAGCAC CAATGATCGC GATTTTGGCG GCTGTGGTGG CTGGTATCTA CCCCGCGTGG
CGTGTGTGTA CGACTAACCC AAGTGTTTAT CTTAAGAGCC AATAA
|
|---|
| Protein sequence | MFFYYLDLAW RSIKKTPMLS ALMIMAISIG IGITITTLNI YKMMSINPAG EKSGQLFAVQ
LWSQGPDAWD RFDQQITYQD GMNLLKSDIP SLQTPMFRTG GAVQTEDPAF LPVLQSRVRV
TNNDFFPLFG LEFQYGQAWD DSVDKDARYE VVLTDELNKT LFAGQNSVGK TIYFNAKPYQ
VVGVLKPWAP SPNYYDLNNG AFGNVDTLFV PYSLAPIEEY GSWGNTNGWN YESINTYAQR
LTSEKHWTQY WVQLDTPEQV AEYRQWVRQY IEQQKKLGRF SSPKADVQLS DVDQWLAINK
VVPEDNKVLV GLSALFLIVC LVNMLGLLLS KFLRRAPEIG VRRAIGASQG QIFAQHMVEV
SLMGLFGGLL GLAWAWGSLM LLTKKFDLEA SLTHLDTSMW LIAPMIAILA AVVAGIYPAW
RVCTTNPSVY LKSQ
|
|---|
| |