Gene Shewana3_2952 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_2952 
SymbolsmpB 
ID4478159 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp3545220 
End bp3545711 
Gene Length492 bp 
Protein Length163 aa 
Translation table11 
GC content47% 
IMG OID639727557 
ProductSsrA-binding protein 
Protein accessionYP_870584 
Protein GI117921392 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0691] tmRNA-binding protein 
TIGRFAM ID[TIGR00086] SsrA-binding protein 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.754434 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTAAAGA AAAACTCAAA AAAAGCCGCG CCTGCGACAA TCGCACGCAA TAAGCGCGCA 
ACCTTCGAAT ACCGTTTCGA AGAAAAAATG GAAGCCGGCA TTTCCCTCAT GGGATGGGAG
GTGAAGTCTA TCCGCATGGG TAAAGTGAAC CTATCGGACT GCTACGTCTT CTTAAAAAAT
GGTGAAGCCT TTATGCACGG CTGTACCATT ATTCCGCTTA ATACCGCATC GACCCATGTG
GTGTGCGACC CGATTCGACT GAAGAAATTG CTCTTAAGTC GTAAAGAGTT AGATAAATTA
GCTGGTCTTG TTGAGCGCCA AGGCTACTCG ATTATCCCTA TCTCCATGTA CTGGCGTAAA
GGGGCTTGGG TCAAAGTAGA AATCGGCCTA GGTAAAGGTA AAAAAGACCA CGACAAGCGT
GAAGATACCA AAGCACGCGA GTGGGAAGTG GAAAAAGCCC GCGTAATGAA AAAGGAAAAA
ACGCGCGGAT AA
 
Protein sequence
MVKKNSKKAA PATIARNKRA TFEYRFEEKM EAGISLMGWE VKSIRMGKVN LSDCYVFLKN 
GEAFMHGCTI IPLNTASTHV VCDPIRLKKL LLSRKELDKL AGLVERQGYS IIPISMYWRK
GAWVKVEIGL GKGKKDHDKR EDTKAREWEV EKARVMKKEK TRG