Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_2870 |
Symbol | |
ID | 4478745 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | - |
Start bp | 3432126 |
End bp | 3433793 |
Gene Length | 1668 bp |
Protein Length | 555 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 639727476 |
Product | diguanylate cyclase |
Protein accession | YP_870503 |
Protein GI | 117921311 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.00315586 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGTAAAC CTAACTTGCA ACATTTTTGG TGCTTTTTGC TGCTTCTTTG GACATTTAGT CCGTTTGCCC ATAGCGCTGA AATTGCGTTG GATTCCCCCT ATTTATTCCA TGCCGATGCG AAACAGCTCC CTCCCGAGCA TTTTAATGAC GTGACCCAGT GGATGGGGCC ACTTGAGGAG GCTCGGTCAG TCAGCCTTGC GGGCGGTGAC TATTGGATGG TATCACCCGT GATGGTCAAT AGCCGTCAAA GCCATTGGGT GGTGGATGCC AGTAATTCGA TTGTGGAATC CGTTGATTAT TGGTTACTTG GCAGTGATGG CTCAGTGCAA ACGGCCCATA GTGGTTACTA TGCGCCCTAT GAATTTTTAT TCGATTACGG CCGTAAAGTG CGGCTGAATA TGGGGACCGA TTATTGGTTA GTGACTCGGC TCAGTAGCCG CTATTATTCC TCCGCGCCCG AATTGGCTAT AGAGTCGGAA GAAGTGCACC AGTTAACCAA CGACCGTGTG GCCATGGCGA TACTGATTTG TTTAGGGGGA TTGCTCTTTA TCGCTCTATA CAATCTACTG ATTTACATCT CTATTTTTGA TAAAGCCTTC TTATACTATG GTCTTTATGT ATTGACCTAT TTTGGTGGCT GGGCACTGAC CTTCCATTTA CCGGCGCATC TATTTAACTT CCATCAGCTT GAATTACATC ATCTGTTTTT TATCAGCTTG CCGATATTTA ACATCATGTT CTACAAGCAC TTCTTACAGT TACCTAGCTA TTCGCCTAGA TTATGGCGGC TTAGCCAATA TTTATTAGTC GCGTGTATTT TAGCCTTGCC GACCAGTATT TGGTTATTGC CCTATACCGC GATTATTGCC TCTGTCTTAA TCATGCTGTG GATTGCGTTA GCGATCACCT GTGGCAATGT GTGCTTGATG AAAGGCTTTG CCCCCGCGCG CTATTTCATC ATGGCCTTTA GTTGTTTGCT GTTGCCTGCG GTGATTATTC TTCCGGGCAA TATGGGGATC ACCCCTGATT TTATTGAACA TGCCGAGTTT GCGACACTAC TGGGTGGCAC TGTGGATGCT TTGCTGTTAT CTCTTGCGTT AGCGAATAAG CTCAAACTGT TGGCCGAAGA GCGCAAGGCC CACATTGAAG AACTCGGTAT CGCTTGGGAG AAGGCCAGAC TCGATGGTTT AACTCGAGTC GGTAATCGTT ATGCCTTTGA TGAATATATG AATTCGCAAT TAACCTTTGC CGATAAGGTT GTACAACCAA CGGCCTTGGT GCTGCTTAAT GTCGACAGTC TTAAAATGGT GAACGATACC TTAGGGCATC AGGAAGGAGA CCGTTTACTG CAAAATCTAG TGCAGTTTTT ACAGGCGACC AATATTGCTC ACCTTAAGAT TTACCGGATC AGCGGCGATG AATTTGTGCT TATTCTGCCC GCAAATGGCA TGGGGATCTT AACCAGCAGC TTAAAGGGAT TAACGGCGCA ATTTGCCGCC GAAGGCTTAA AGGATTGTCA GTTTAGTTTT GGCTTTGCCA TCAATAGCGA TGTGGCCGAA CCCCACGAGT GGCTACGCTG CGCCGACAGC AATTTGTATC AGTCACGAAT GGAAAAACGT CGTCAAGAAT TCGCCGATAC CCGCGCGGGT GAGATAGTCT CTATTTAA
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Protein sequence | MSKPNLQHFW CFLLLLWTFS PFAHSAEIAL DSPYLFHADA KQLPPEHFND VTQWMGPLEE ARSVSLAGGD YWMVSPVMVN SRQSHWVVDA SNSIVESVDY WLLGSDGSVQ TAHSGYYAPY EFLFDYGRKV RLNMGTDYWL VTRLSSRYYS SAPELAIESE EVHQLTNDRV AMAILICLGG LLFIALYNLL IYISIFDKAF LYYGLYVLTY FGGWALTFHL PAHLFNFHQL ELHHLFFISL PIFNIMFYKH FLQLPSYSPR LWRLSQYLLV ACILALPTSI WLLPYTAIIA SVLIMLWIAL AITCGNVCLM KGFAPARYFI MAFSCLLLPA VIILPGNMGI TPDFIEHAEF ATLLGGTVDA LLLSLALANK LKLLAEERKA HIEELGIAWE KARLDGLTRV GNRYAFDEYM NSQLTFADKV VQPTALVLLN VDSLKMVNDT LGHQEGDRLL QNLVQFLQAT NIAHLKIYRI SGDEFVLILP ANGMGILTSS LKGLTAQFAA EGLKDCQFSF GFAINSDVAE PHEWLRCADS NLYQSRMEKR RQEFADTRAG EIVSI
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