Gene Shewana3_2793 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_2793 
Symbol 
ID4479780 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand- 
Start bp3332138 
End bp3333232 
Gene Length1095 bp 
Protein Length364 aa 
Translation table11 
GC content52% 
IMG OID639727399 
ProductdTDP-4-dehydrorhamnose reductase 
Protein accessionYP_870426 
Protein GI117921234 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1091] dTDP-4-dehydrorhamnose reductase 
TIGRFAM ID[TIGR01214] dTDP-4-dehydrorhamnose reductase 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.114902 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTATGCGC CTAATGGCGA GCCAGAATCG ACAGCAACAG TATTGTTGAC TGGCGCAGAT 
AGCCAACTGT CTAAGGCTCT AGTGCGAGTG CTTGCCAGGG CGGCTTATCG ATTCGATGGC 
CGCGCCTTTC GTGTGCACGC GCTTAGCCAT GCCCAGTTAG ATATTGGTGG TAAACAGAGC 
GTTGCCGCCG TCTTTGCCCA CGTTAAACCT GACTGGGTGA TCAACTGCGC CGCCTACAAT 
GCGGTCGATA GGGCAGAAAC GGCGGTGGAT GAGGCTTATC GTGTCAATAG CCTTGGGCCA 
GAGTTATTGG CAAGCGAATG TGCGCTCACG GGCGCGCGTT TGGTACATAT CTCCAGCGAT 
TATGTGTTTA GCGGCGAGCC AGCGGAGGTT GCTGAACTGG CGTTAAATCA GAACAGCTTA 
ACCGATAGCA GCTTAAGTAA TAGTGGTTTA ACTGAAAGCG GCTTAATTGA ACGCGGGTTA 
ACCGAAAGCG CCACACCAGC GCCCTTATCT GTCTATGGCA AGAGTAAACT CGCGGGGGAG 
CAAGCGGTGC TGCGCATCTT GGCTGAGCGC GGGATGGTTA TTCGCACCGC ATGGCTGTAC 
GGTGTCGATG GGCATAATTT TGTGAAAACC ATGCTGAGGT TGATGGCTAC CATGCCCGAT 
AGACAGCCAC TCTCAGTGAT AAACGACCAA ATAGGTTCGC CGACATGGGC AGATGCACTC 
GCGCATCTTA TTTGGCAGTT AATAGCGAGT CCGTTAAACG CTAGTGGCGA ACCCAGACTA 
TTCCATTATG CTGGGCATGG GCAATGCAGT TGGTATGAAT TTGCCCTCGA AATCCAGCGC 
CAAGCCTTGG CACTGAAGTT ATTAGATAAA GCGTTGCCGA TTAGCGCCAT AGATAGCCTA 
AGTTATGCTG CAAAAGCGCT TGAGAAAGGC AATAAACTGG CACCAAGGCC AAGTTACAGC 
GCGCTAAATA GCGATAGAGT TCGCCAGTAC TTAACTAGGG AGAATTTGGC ATTAACCCAT 
AGCCCCGAGC TGTGGCGTGA CTGGCGGTGG CAGCTTAAGG CTATGCTTGA AGATTATGCC 
GAAAAATGCC CTTAG
 
Protein sequence
MYAPNGEPES TATVLLTGAD SQLSKALVRV LARAAYRFDG RAFRVHALSH AQLDIGGKQS 
VAAVFAHVKP DWVINCAAYN AVDRAETAVD EAYRVNSLGP ELLASECALT GARLVHISSD 
YVFSGEPAEV AELALNQNSL TDSSLSNSGL TESGLIERGL TESATPAPLS VYGKSKLAGE 
QAVLRILAER GMVIRTAWLY GVDGHNFVKT MLRLMATMPD RQPLSVINDQ IGSPTWADAL 
AHLIWQLIAS PLNASGEPRL FHYAGHGQCS WYEFALEIQR QALALKLLDK ALPISAIDSL 
SYAAKALEKG NKLAPRPSYS ALNSDRVRQY LTRENLALTH SPELWRDWRW QLKAMLEDYA 
EKCP