| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_2784 |
|---|
| Symbol | |
|---|
| ID | 4479771 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 3323500 |
|---|
| End bp | 3323985 |
|---|
| Gene Length | 486 bp |
|---|
| Protein Length | 161 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 639727390 |
|---|
| Product | ferredoxin-type protein NapF |
|---|
| Protein accession | YP_870417 |
|---|
| Protein GI | 117921225 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2878] Predicted NADH:ubiquinone oxidoreductase, subunit RnfB |
|---|
| TIGRFAM ID | [TIGR00402] ferredoxin-type protein NapF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.9279 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.000480705 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACAGAAA GCATCAATCA CAGCCGCCGT AATCTCTTTA GCCGCCGTAA ATCCTCGGCC
ATTAGACCGC CTTGGGTGCG CGAAGGCATT GAGTTTACTG ACATCTGTAC CCGATGCACG
GCCTGTATCA CAGCCTGCGA AACGAAGATT ATCTACAAGG GAGATGGCGG CTTTCCCGAA
GTCTCCTTTA AGGACAATGA GTGCACTTTT TGTCGCCGAT GTGCGAGCGT CTGCCCGGAA
GAAAAGCTGT TTGATTTGAC CCAAACTCCT TGGCAACACA AAGCGGTTAT TCAAGATAAC
TGCTTAACAT ATCAGGGCAT TTGGTGCCAA AGTTGTAAGG ATGCCTGTGA GCCTCGCGCC
ATTAGCTTTA CCTTAAGCGT GGGTAACGCG CCGATGCCGA AGATTGATAG CGAGCTTTGC
ACTGGCTGCG GTGCCTGTGT CGCCCCCTGT CCGAGCCAAG CCATCAGTAT TAAGCCTGTA
GAATAA
|
|---|
| Protein sequence | MTESINHSRR NLFSRRKSSA IRPPWVREGI EFTDICTRCT ACITACETKI IYKGDGGFPE
VSFKDNECTF CRRCASVCPE EKLFDLTQTP WQHKAVIQDN CLTYQGIWCQ SCKDACEPRA
ISFTLSVGNA PMPKIDSELC TGCGACVAPC PSQAISIKPV E
|
|---|
| |