Gene Shewana3_2757 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_2757 
Symbol 
ID4479401 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp3291098 
End bp3292117 
Gene Length1020 bp 
Protein Length339 aa 
Translation table11 
GC content50% 
IMG OID639727363 
Productdiguanylate cyclase 
Protein accessionYP_870390 
Protein GI117921198 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAAACT CACCGAAACT GGCACGCCAA CAACCCGCCT TATCCATTGT CGATGATGCT 
GCATTGGCCG CAACTCAGCA TGCAAAGGCT GCCGAGCTAC CGCTGAACTT TTTCGAGCAT
TCTTCCCTCG AGACCATTGA ACTCTTTATT CAACATTTAA CCGAGCCAGT GATCCTAGTG
AATGCCAACG GCTTTATCCG TTCGTGCAAT CAACGTAGTG CCGAGCTGCT CGATTGCCCG
CAGGCGAGTT TAAAGGGCCA AGACTGGCGC AATTTTTTGA CCGAACATCA TCAAGCGCGC
TACGACAATC TCCTGAGTCA CGATGTGCAA CTAGGCACCA ATTGTGGTCA CCCCGTGCAG
CACCCTGCGC AGGAAACCAC GCTGATCTGC GCCTCTGGCA AAGCCAAAGA TGTTGAGTTG
TCTATCTCTT ATATTCCTAG CCATGAACCT GTGTTTGTGA TGGTGATGCA CGATTTAACT
CAACATAAGG CGGAAAACCT CAAGCTGCGT AAATTGGCCG CCACCGACTC CCTCACCCAA
CTGGCGAACC GTCGCTATTT TGATGAAATG CTGCAACAGC AATGGGAAGA ATGCACCGCC
AAACTGCGTC CCATCAGCGT AGTCATTATC GATGTGGATT ATTTTAAGGT GTTTAATGAC
CAGTTTGGTC ATATCCAAGG TGATGAATGC CTTAGAAAAA TCGCCAAAGT GATCGCCAAT
ATTGTGCCTA TCGACATCGG TCTTGCGGCC CGTTACGGCG GCGAAGAGTT TGCGCTGATC
CTGCCTAATC ACAATGCCAA AATGGCGCTG ACCATAGCGC AAAAAATTCA GCAAGAGATT
AATGATATTC GCTTTACTGA CCAAGGACTT AGGGATTATG TCTCGATAAG CGCCAGCCAA
GGGATTGCCA GTGAAGTTAA TGGCCAGTTC CGTACTTCAC TCGCCATGGT GTGCGCCGCC
GATACCGCGC TTTACCGCGC CAAGGCCGAT GGTCGTGACC GGATAAACGC CTCACTGTAG
 
Protein sequence
MTNSPKLARQ QPALSIVDDA ALAATQHAKA AELPLNFFEH SSLETIELFI QHLTEPVILV 
NANGFIRSCN QRSAELLDCP QASLKGQDWR NFLTEHHQAR YDNLLSHDVQ LGTNCGHPVQ
HPAQETTLIC ASGKAKDVEL SISYIPSHEP VFVMVMHDLT QHKAENLKLR KLAATDSLTQ
LANRRYFDEM LQQQWEECTA KLRPISVVII DVDYFKVFND QFGHIQGDEC LRKIAKVIAN
IVPIDIGLAA RYGGEEFALI LPNHNAKMAL TIAQKIQQEI NDIRFTDQGL RDYVSISASQ
GIASEVNGQF RTSLAMVCAA DTALYRAKAD GRDRINASL