| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_2156 |
|---|
| Symbol | |
|---|
| ID | 4478352 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 2584055 |
|---|
| End bp | 2585914 |
|---|
| Gene Length | 1860 bp |
|---|
| Protein Length | 619 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 639726744 |
|---|
| Product | peptidase M2, peptidyl-dipeptidase A |
|---|
| Protein accession | YP_869792 |
|---|
| Protein GI | 117920600 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1164] Oligoendopeptidase F |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0251377 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.793528 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTATTC TATTGAATCG TCCCACCACT CTTGCGCTCA CCATAGCACT AACCTTAGGC
GTAACCGCCT GTAATGATGC CCAAAGCAAG GCCGAAACCA CTGCAGCACC TGCTGCAACT
AATGCTGCGC CCGATAAAGC TCAGGCCATC GCCTTTATTC AAGATGCTGA AGCCCAGATG
GCGCAGCTCT CTATCGAAGC GAATCGCGCC GAATGGATTT ACAGTAACTT CATCACCGAA
GATACCGCTG CACTTTCGGC CGCAGTCGGT GAAAAAGTCA GTGCCGCGTC GGTAAAATTT
GCCACCGAAG CTGCCAAGTA CGCCAATGTG GAACTCGATC CAGCCAATGC GCGCAAACTG
AATATTCTGC GCAGCGCACT CGTGTTACCT GCGCCGCTTG ATCCCGCCAA AAATGCTGAG
CTGGCGCAAA TCAGCTCCGA GCTCAATGGA CTCTATGGTA AAGGCAAATA CTGTTTCGCC
GATGGCAAGT GTATGACCCA GCCAGAGCTG TCGAGCCTGA TGGCGGAATC GCGTGACCCA
GCCAAACTGC TTGAGGCATG GAAAGGTTGG CGCGAAATTG CAAAACCGAT GCGCCCACTA
TTTCAACGTG AAGTTGAACT CGCCAACGAA GGTGCAAAAG ATCTAGGTTA CGCTAACCTC
TCTGAGTTAT GGCGCAGCCA ATACGATATG AAACCCGATG AATTTTCACA GGAGTTAGAT
CGTTTATGGG GACAAGTTAA GCCCCTCTAT GAATCCCTGC ATTGTTACGT TCGCGGCGAG
CTGAATAACG AATACGGTGA TGCCATCGCG CCAAAAACCG GCCCTATTCC CGCACACTTA
CTGGGAAATA TGTGGGCGCA GCAATGGGGC AATGTGTACG ATCTCGTCGC CCCTGACGAT
GCCGATCCTG GCTATGATGT GACGGAATTG CTCGAGCAGA AGGGCTATGA TGAACACAAG
ATGGTTAAAC AGGCCGAAAG CTTTTTCACC TCGTTAGGCT TTGCGCCGCT GCCAGACAGT
TTCTGGAGTC GCTCTTTATT CTTGCAACCC AAGGATCGTG ATGTCGTTTG TCATGCCTCG
GCGTGGGATT TGGATAACCT CGACGATATT CGCATCAAGA TGTGTATCCA GAAAACCGCT
GAAGACTTTA CCGTTATTCA CCACGAGCTT GGACACAACT TCTATCAACG TGCCTATAAA
CAGCAGCCTT TCCTGTTTAA AAACAGTGCC AATGATGGTT TCCATGAGGC CATTGGTGAC
ACGATCGCGC TATCTATTAC CCCAAGCTAT CTAAAACAGA TTGGCTTGCT CGAAGATGTG
CCCGATGCTT CTAAGGATAT TGGCTTACTG CTGAAACAAG CTTTAGATAA AATCGCCTTC
CTGCCCTTTG GTTTGATGAT TGACCAGTGG CGCTGGAAAG TCTTTAGCGG TGAAATCACT
CCAGCGCAGT ATAACCAAGC CTGGTGGGAA TTAAGAGAGA AATACCAAGG CGTTAAGGCG
CCAACGGATC GCAGCGAAGC CGATTTTGAC CCAGGTGCCA AATACCATGT GCCCGGTAAC
GTGCCTTATA CGCGCTACTT CCTCGCACAT ATTCTGCAAT TCCAGTTCCA TAAGGCGCTA
TGTGATACCG CCGGCGATAA AGGACCTGTA CACAGATGCA GTATTTATGG CAATCAAGCC
GCTGGGGAAA AACTCAATAA AATGTTAGAG CTGGGTGCAA GCCAACCTTG GCCAGTTGCT
TTAAAAGAAG TGACAGGTAC TAAGGGAATG GATGCCAAAG CCGTACTCGA TTATTTTGCG
CCGCTTAAAA CTTGGCTCGA TGAGCAAAAC ACGGCGGCGA ATCGTCAATG TGGTTGGTAA
|
|---|
| Protein sequence | MAILLNRPTT LALTIALTLG VTACNDAQSK AETTAAPAAT NAAPDKAQAI AFIQDAEAQM
AQLSIEANRA EWIYSNFITE DTAALSAAVG EKVSAASVKF ATEAAKYANV ELDPANARKL
NILRSALVLP APLDPAKNAE LAQISSELNG LYGKGKYCFA DGKCMTQPEL SSLMAESRDP
AKLLEAWKGW REIAKPMRPL FQREVELANE GAKDLGYANL SELWRSQYDM KPDEFSQELD
RLWGQVKPLY ESLHCYVRGE LNNEYGDAIA PKTGPIPAHL LGNMWAQQWG NVYDLVAPDD
ADPGYDVTEL LEQKGYDEHK MVKQAESFFT SLGFAPLPDS FWSRSLFLQP KDRDVVCHAS
AWDLDNLDDI RIKMCIQKTA EDFTVIHHEL GHNFYQRAYK QQPFLFKNSA NDGFHEAIGD
TIALSITPSY LKQIGLLEDV PDASKDIGLL LKQALDKIAF LPFGLMIDQW RWKVFSGEIT
PAQYNQAWWE LREKYQGVKA PTDRSEADFD PGAKYHVPGN VPYTRYFLAH ILQFQFHKAL
CDTAGDKGPV HRCSIYGNQA AGEKLNKMLE LGASQPWPVA LKEVTGTKGM DAKAVLDYFA
PLKTWLDEQN TAANRQCGW
|
|---|
| |