Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_1990 |
Symbol | ampC |
ID | 4476354 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | - |
Start bp | 2369276 |
End bp | 2370493 |
Gene Length | 1218 bp |
Protein Length | 405 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 639726572 |
Product | beta-lactamase |
Protein accession | YP_869627 |
Protein GI | 117920435 |
COG category | [V] Defense mechanisms |
COG ID | [COG1680] Beta-lactamase class C and other penicillin binding proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.00153808 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCCAGAGT CTCTTCAGCC TGCCGTAAAA ACAGCGAGGT TTTTACGCTT ATCGAACCCA TCACCCTTTT TAGGTTTAGT GCTGCTTACG GCAGTGCCAT TAGTGGCCAA TGCTGCACCA CAGGTTCAAA CAAAAGCCAT GCAATCCCTT GTCGATTCCG CGATCAATCC GTTAATGAAG GAATATGGGA TCCCAGGGGC TATTGTTGGG ATCAGTATGA ATGGTCAACA GTATTTCTTC CCCTATGGTG TGAGCTCAAA AACCACAGAG CATCATGTCA GCAAGAATAC CCTGTTCGAG ATTGGTTCTA TCAGCAAAAC CTTTACCGCG ACACTCGCAA ACTATGCTCA AGTCGAAGGT AAGCTCACTT TGACTGATAA AGTAAGCCAA TACCTGCCCG AATTAACGGG CAGTGCCTTT GATCAGATAA ATCTTATCAA TCTCGCGACC CATACCGCGG GCGACTTGCC CATGCAAGTG CCAGATAAAG TGACGAACAA TGCAGAATTG ATGCGTTATT TTAAAGAATG GCAACCCGCC TATGCCGCGG GAACACACCG AAATTATGCT AATCCCAGCA TTGGATTACT CGGCTTAATT GCGGCAAAAC AGTTAGGGCA AAGCTTTCCA AACGCAATGG AGCAAACCCT ATTTCCACAA CTGGGTATGA CTCACAGCTA TCTTCAAGTG CCAAGCAACA AGCTGGCCGA TTACGCCCAA GGATATAACA AGCAAGATCA GCCCGTGCGC CTGAATCCCG GTGTGTTAGC CGAGGAGGCT TACGGGATTA AAACTTCGGC CGTGGATTTG CTGCGTTTTG TTGAAACCAA TATGCAGCAA CATCCTGTCC CTTCCGTACT ACAGCAGGCC ATAGATGCAA CTCACGTTGG CTACTTTGAT GTCGGTATGA TGACCCAAGA GATGATTTGG GAGCATTATC CCTATCCTAT AGCCCTCGAT AAGCTGCTTG CTGGACATAC CCAAGAAGTG GTGTTTGGCA GTGTGCCAGT GAAAGCAATC GTGCCGCCGC AAGCACCACA GCCTGATTTA TGGATAAATA AGACAGGTTC AACTGGTGGC TTTGCCGCCT ATGTGGCTTA TATTCCCGCG AAGAAACTGG GCATGGTGTT ACTGAGCAAT AAAAATTATC CCGTTCCGCC TCGGGTGACT GTTGGCTACC AGATATTAAC GGGCTTAACA GCACTGCCAG CGAAATGA
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Protein sequence | MPESLQPAVK TARFLRLSNP SPFLGLVLLT AVPLVANAAP QVQTKAMQSL VDSAINPLMK EYGIPGAIVG ISMNGQQYFF PYGVSSKTTE HHVSKNTLFE IGSISKTFTA TLANYAQVEG KLTLTDKVSQ YLPELTGSAF DQINLINLAT HTAGDLPMQV PDKVTNNAEL MRYFKEWQPA YAAGTHRNYA NPSIGLLGLI AAKQLGQSFP NAMEQTLFPQ LGMTHSYLQV PSNKLADYAQ GYNKQDQPVR LNPGVLAEEA YGIKTSAVDL LRFVETNMQQ HPVPSVLQQA IDATHVGYFD VGMMTQEMIW EHYPYPIALD KLLAGHTQEV VFGSVPVKAI VPPQAPQPDL WINKTGSTGG FAAYVAYIPA KKLGMVLLSN KNYPVPPRVT VGYQILTGLT ALPAK
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