| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1985 |
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| Symbol | |
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| ID | 4476349 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | - |
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| Start bp | 2363811 |
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| End bp | 2365352 |
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| Gene Length | 1542 bp |
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| Protein Length | 513 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 639726567 |
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| Product | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase |
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| Protein accession | YP_869622 |
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| Protein GI | 117920430 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2027] D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) |
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| TIGRFAM ID | [TIGR00666] D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00266224 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0000014731 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACGTACT CGCTAAACAA GGATAAGTTA CAGGCATCAT TCACTCGCCC CAAGATTAAA
GGGTTACTCT TAGGTAGCTT GGTAAGCATG CTACTGTCAA CCCAAGCCCA TGCGGCAATT
CATCCGATGG ATGAGTCGAT ATTGGCCAAG CAAATCGCCG ATATTGCTCC GCGTCATTCG
CAAGTGGCTT TGTTGGCCCG TGATTTAAGT ACCAATACCC TGTTATACAG CCAGCAAGCC
GATACCTTAT TTATCCCCGC CAGCACACAA AAAGTGCTGA CCGCCGTTAC CGCTTTGGCC
ACCCTTGGCC CAGATTTTCG CTATGTCACT GAGCTGTGGA GTGATGCGCC TATTCGCCAA
GGTCATATTG CGGGCAGTGT TTATCTGCGT TTTAGCGGCG ATCCGACGCT AACTCAGGAC
GACCTTAAGG CCTTGTTTGC TCATCTACAA AAGCAAGGCA TAACAAGCAT TGAGGGGCAT
CTCTATCTTA TCGGGGATAA ACAAGAGCAA TTACAAGCGC CTGGCTGGGT GTGGGATGAT
CTCGGGATTT GCTTTGCAGC GCCGGTGTCG AGTTATATCA TCAACCAAAA CTGCGTGTAC
GGGCAGTTTG CGCCAAGCTC AGCCAAGCAT GCTTCTGAGG TGAAATTAAG GGCATCGAGT
TTTGGGGTGA AAGTGAGTAG CGACGCCATA TTCTCCCCCA AAGCAGGCCA TGATTTTTGC
CAACTCGATT TAGTACGCCT TGGCCAGAAT CAGTATCATC TACGGGGCTG CTATCCTGGC
AATGAAGCGA TACCGCTGGC GATTGCCATT AGCGATCCTG AAAAATTTGC CATGGACACC
CTAACAGCGA CGCTCAAGGG TGAAATGTCA CTCTCAGGTA AAGTGAAGAT AGGCAACGCC
ATCCCTTCGA AGGCAAAACT CATTGCCAGC CATAGCAGCG CACCCTTGCC TGAACTGCTC
AAAACCATGT TGCTGAAGTC GGATAACCTG ATTGCCGATA GTTTGTTTAA GCGCGTGGGG
CAAAGTTATT ACAAAGCCCA AGGCAGCTTT ACCCATGGTG CAGCGGCTAT GCGCCATATA
CTGACTGAGC TTGGGATTGA TTTAACCAAC GCCAATATTG TCGATGGTTC AGGGCTTTCT
CGCTATAACC TGTTGAGCGC AAAACAATTA GCCGATGTAC TGGCACTCAT TTACCAAGAT
GCACGCTTTC ACAGCCTCAT TGACAGTTTG CCCGAAGCTG GTGTCAGCGG CACACTGCAA
TATCGCTTGG GATACACTAA ACCGCCCTTA AAACATCGAG TGTTTGCCAA GACTGGCTCG
ATGCAGGGTG TCGCCAATTT AGCTGGCTTT ATGCGTTTAG CGCAGCAGCG GGATATTCTC
TTTGTCGTGC TCGAGAATGG CATCAGTCCT GAAACCAAAA AACAACGTAA GCCCGCCTTT
AGCGCTGACT TTTTAACTCG GCTACTGAGC GCTGTCGAAA CTCAAACTCA GACCAGCCAA
ACAACGACCA CTGAGCTCAA CACCGTTAAG TTAAGTGATT AA
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| Protein sequence | MTYSLNKDKL QASFTRPKIK GLLLGSLVSM LLSTQAHAAI HPMDESILAK QIADIAPRHS
QVALLARDLS TNTLLYSQQA DTLFIPASTQ KVLTAVTALA TLGPDFRYVT ELWSDAPIRQ
GHIAGSVYLR FSGDPTLTQD DLKALFAHLQ KQGITSIEGH LYLIGDKQEQ LQAPGWVWDD
LGICFAAPVS SYIINQNCVY GQFAPSSAKH ASEVKLRASS FGVKVSSDAI FSPKAGHDFC
QLDLVRLGQN QYHLRGCYPG NEAIPLAIAI SDPEKFAMDT LTATLKGEMS LSGKVKIGNA
IPSKAKLIAS HSSAPLPELL KTMLLKSDNL IADSLFKRVG QSYYKAQGSF THGAAAMRHI
LTELGIDLTN ANIVDGSGLS RYNLLSAKQL ADVLALIYQD ARFHSLIDSL PEAGVSGTLQ
YRLGYTKPPL KHRVFAKTGS MQGVANLAGF MRLAQQRDIL FVVLENGISP ETKKQRKPAF
SADFLTRLLS AVETQTQTSQ TTTTELNTVK LSD
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