| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1784 |
|---|
| Symbol | |
|---|
| ID | 4478671 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 2102752 |
|---|
| End bp | 2105067 |
|---|
| Gene Length | 2316 bp |
|---|
| Protein Length | 771 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 639726367 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_869423 |
|---|
| Protein GI | 117920231 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1033] Predicted exporters of the RND superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.455314 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.263872 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTAGAAA AACTGGTCAA CGGATTTGAG TCATTTTTAT TCCGCAACCG TGCTTGGGTG
GTGAGCATTT TTATTTTGCT GACGGTTTTT TTGGGATACC AAGCTAGCCA ATTAAAAATG
GATGCGGCAT TCATTAAAAA TATTCCGCTT AATCATAGCT ATATGCATAC CTACCTCAAA
CATCAAAAAG ATTTTGGTGG CGCGAATAGC ATTATGGTGG CGGTGGAAGA CACCAGCGGC
AATATTTTTA ACCCTAACTT TTTCGATACC CTTAAAAACG TTCACGATCA GCTGTTTTTT
ATTCCCGGTG TTGACCGCTC ACAGGTGAAA TCTTTATTTT CACCTTCGAC CCGTTTTACT
GAAGTCGTGG AAGATGGTTT TGCGGGCGGC CCTGTGATCC CCGCAGATTT CACGACCACC
GAAGCGGGCT TGAACACGGT GCGCGATAAC ATTGAAAAAG CGGGCATTGT GGGGCGCTTG
ATCGCCAACG ACTATAGTGC CGCCATGGTG TCGGCCCAGT TGATGGACTT TGATCCACAA
ACGGGTAAGC CTTTAGACAC CATCGCTTTT GCCGCTCAGC TAGAGCAGGA ACTTCGCGGT
AAGTATGAAA CCGATAAGGT GAAAATACAT ATCATCGGTT TTGCGAAGAT GGCGGGTGAT
GTTGCCGATG GCGCCAAAGG CGTTTTACTG TTCTTCGTGA TTGCCATTTT GATCACGGCG
GTGATGGTCT ATCTATTTTC AAAGTCACTT ATCCTGACCC TATTGCCATT AGTTTGTAGC
TTAACGGCGG TGATCTGGCA GCTGGGTTTA CTGACGGTCA TCGGTTTTGG CTTAGATCCC
ATGTCAATTT TGGTGCCATT CCTCGTCTTT GCTATCGGGG TGAGTCACGG GGTGCAGATG
ATCAACGCGG TCAGACGCCG GGTGATGGAC GGACAAACCA CCAAGGCGGC CTCGGCTTCT
GCGTTTCGCA GCTTATTGGT GCCGGGCGGG GTAGCGTTGC TTTCTGATAC GGTTGGTTTT
ATCACACTGT TATCCATTGA TATCGGTATT ATCCGTGAGT TGGCCATTTC GGCCTCACTC
GGTGTGGGTG TGATTATTTT CACTAACCTT ATCCTTCTGC CTTTAGTGAT TTCTTTCACT
GAACTCAAGG TTGCACCACA GGGCGCGCCG ACCTCGGATG AAGTGCGAGC CGAGGCGATT
TGGCGCTACC TTGCCAAATT TGCTACGCCG AAATACGCGG TAGTGGTAAT TGTGGCGACC
ATTGCCTTGT ATTTTACGGG TCTGCAACAG GCTAATCAGA TGAAAATTGG CGATTTGCAG
GGCGGGGCGC CAGCATTGCA TCAAGATTCA CGCTACAACT TGGACACCTT CTTTATTACA
GACCACTTTT CGATCACCAC AGATGTGATG ACTGTGATTG TAGAAGCGAG CCCAGAGGCC
TGTACTTACC ACGATATGCT GACGCAAATT GATGAGTTTG AATGGTTAGT GCGTAATACC
CCGGGTGTTG AGTCAACCGT CAGCTTGGCC TCGGTAGCGA AAAAAGTGAA TGCGGGCTTT
AACGAAGGCA ACCCAAGATG GGAAGTCTTA CCGCGCACCA CTGCGAGTTT AGTGCAAGCG
ATTGGCCAGA TCCCAACGAC ATCGGGCTTG TTAAATGGCG ATTGCTCTGT GATGCCTGTG
TATCTATTTA TGCAGGATCA CAAGGCAGAA ACTATTGAAA CGGTTGTCGC TAAGGTGAAA
GCGGTCGCGG CCAAAATGGA CAATGACAAG CTGCAATTTA AGTTGGCGTC TGGCCCTGTT
GGAGTGATGG CGGCGACCAA CGAAGCGGTA GCGGAAGCTC AATTACCTAT GATGATTTAT
GTGTATGGCG CGGTATTTGT ACTTTGCCTT ATCAGCTTTA AGTCATTAAA AGCGACAGTC
GCGGTGATTA TTCCGCTCTA TGTGGTCTCC ACACTGGCGC AGGCACTGAT GACTCAACTT
AATATTGGCT TAGCAGTCAG TACCTTACCC GTAATTGCGC TGGGTGTGGG TATCGGTGTT
GACTACGGTA TTTATATCCT GTCGACCATG TCATCTAAGT TGTCGAATGG AATGCCAGTA
CAGCAAGCCT ACTATGAAGC GTTAGTCGAG CGGGGCAGTG CGGTGATCTT CACTGGTCTG
ACATTAGCGA TTGGGGTGAG TACTTGGTTT TTCTCGGCGC TTAAGTTCCA AATGGACATG
GGGATCCTGC TCACCTTCAT GTTTGTGGTA AATATGTTGG GCGCCATAAT TATCCTGCCC
GCACTGGCAG CGGTATTCTG GCGGCAGGCT AAGTAG
|
|---|
| Protein sequence | MLEKLVNGFE SFLFRNRAWV VSIFILLTVF LGYQASQLKM DAAFIKNIPL NHSYMHTYLK
HQKDFGGANS IMVAVEDTSG NIFNPNFFDT LKNVHDQLFF IPGVDRSQVK SLFSPSTRFT
EVVEDGFAGG PVIPADFTTT EAGLNTVRDN IEKAGIVGRL IANDYSAAMV SAQLMDFDPQ
TGKPLDTIAF AAQLEQELRG KYETDKVKIH IIGFAKMAGD VADGAKGVLL FFVIAILITA
VMVYLFSKSL ILTLLPLVCS LTAVIWQLGL LTVIGFGLDP MSILVPFLVF AIGVSHGVQM
INAVRRRVMD GQTTKAASAS AFRSLLVPGG VALLSDTVGF ITLLSIDIGI IRELAISASL
GVGVIIFTNL ILLPLVISFT ELKVAPQGAP TSDEVRAEAI WRYLAKFATP KYAVVVIVAT
IALYFTGLQQ ANQMKIGDLQ GGAPALHQDS RYNLDTFFIT DHFSITTDVM TVIVEASPEA
CTYHDMLTQI DEFEWLVRNT PGVESTVSLA SVAKKVNAGF NEGNPRWEVL PRTTASLVQA
IGQIPTTSGL LNGDCSVMPV YLFMQDHKAE TIETVVAKVK AVAAKMDNDK LQFKLASGPV
GVMAATNEAV AEAQLPMMIY VYGAVFVLCL ISFKSLKATV AVIIPLYVVS TLAQALMTQL
NIGLAVSTLP VIALGVGIGV DYGIYILSTM SSKLSNGMPV QQAYYEALVE RGSAVIFTGL
TLAIGVSTWF FSALKFQMDM GILLTFMFVV NMLGAIIILP ALAAVFWRQA K
|
|---|
| |