| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1447 |
|---|
| Symbol | |
|---|
| ID | 4479664 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 1678404 |
|---|
| End bp | 1679417 |
|---|
| Gene Length | 1014 bp |
|---|
| Protein Length | 337 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 639726017 |
|---|
| Product | RND family efflux transporter MFP subunit |
|---|
| Protein accession | YP_869087 |
|---|
| Protein GI | 117919895 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000000819965 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.000000000091848 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGCAA TCTCACGTAC TCTATTCACA TTATTCGTTT TTTCCCCCTT TGCCACCCAG
GCTGCGCCCT TAGCGACCCT CGAGGTGATG AGCAAACCGT ACGCGAATTG GGTGACCTTA
GACGCCAGTA TCGAGGCTGT CAAAGCGGCT ACCGTCTCGG CGCAAACCTC AGGGCGTATC
GTTAAGCTCA ACTACGATGT TAATGATGTC GTGCCAGAAG GCGCGGCGTT ACTCGAGATC
ACCAGCAAAG AGCAAGGCGC AGAACTGGCA AGCTATGAAG CCGATCTCGC CAAAGCAACA
GCCCTGAATG TCGAGGCGCA GGCCCAATAC AAACGCTATA AAGAACTCTT CCCCCAAGGC
GCGATTTCAA AAGGCGCCAT GGATGAAGCG ACCGCCAATG CCAAGGCCGC CGAACAAGCC
GTGAGTGCCG CCAAAGCTAG GGTTATCAAA GCCACTGAAT CCCTCAAATA TACTGTGGTA
TCGGCACCAT TTAGCGGCAT TGTCACCGAG CGTTTAGTCG AATTAGGCGA AACCGTCAGT
GTCGGTCAGC CACTGCTATC GGGGTTTTCA CCGAGCCAAA TGCGCGCTAT CACCCAAGTG
CCACAGCGCT ATATTCAGCA ACTGAAAAAC GCGCCTGAGT TTATGGTGCG CTTAAGTGAT
GGTCGTGAAC TCACCTCCAA GGATCTCACC ATCTTTAGCT TTGCCGACCC AGTGAGCCAC
AGCTATCAGG TACGGATTAA CCTGCCAAAG GATGAGCCTA ACCTTCAACC CGGTACTTGG
GCCAAGGCGC TGTTTAAAAA TGGCGAACGG GAAAAAATCC AACTGCCGAC CTCGACGCTT
ATCACCATGA ATGAGCTTAG CAGTGTCTAC TTGAAAAAAG GCGAGCAATT TGTGCTCACC
CAGGTGCGCG TCTCTGAGCC CGTCGGTGGT GAAGTAGAAG TCCTCGCGGG ACTGCGAACC
GGTGATATTG TCGCCATGGA TGCTTACCAA GTGTTGCTTG AACAAAAGCA ATAA
|
|---|
| Protein sequence | MAAISRTLFT LFVFSPFATQ AAPLATLEVM SKPYANWVTL DASIEAVKAA TVSAQTSGRI
VKLNYDVNDV VPEGAALLEI TSKEQGAELA SYEADLAKAT ALNVEAQAQY KRYKELFPQG
AISKGAMDEA TANAKAAEQA VSAAKARVIK ATESLKYTVV SAPFSGIVTE RLVELGETVS
VGQPLLSGFS PSQMRAITQV PQRYIQQLKN APEFMVRLSD GRELTSKDLT IFSFADPVSH
SYQVRINLPK DEPNLQPGTW AKALFKNGER EKIQLPTSTL ITMNELSSVY LKKGEQFVLT
QVRVSEPVGG EVEVLAGLRT GDIVAMDAYQ VLLEQKQ
|
|---|
| |