| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1302 |
|---|
| Symbol | |
|---|
| ID | 4479876 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 1516864 |
|---|
| End bp | 1517859 |
|---|
| Gene Length | 996 bp |
|---|
| Protein Length | 331 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 639725856 |
|---|
| Product | polysaccharide biosynthesis protein |
|---|
| Protein accession | YP_868942 |
|---|
| Protein GI | 117919750 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
|---|
| TIGRFAM ID | [TIGR03589] UDP-N-acetylglucosamine 4,6-dehydratase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.112616 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGATA ATAAAACAAT TTTGATTACT GGTGGCACAG GGTCATTTGG ACAAAAATAC
ACCAAAACCA TTCTTGAACG ATATAAGCCA AAACGCTTGA TCATTTTCTC CCGTGATGAA
CTAAAGCAAT ATGAGATGCA GCAGGTCTTT AATGCTCCTT GTATGCGTTA TTTCATTGGC
GATGTGCGTG ATGGTGACCG TCTCAAACAA GCATTTAAAG ATGTGGATTT TGTAATCCAC
GCTGCCGCAC TTAAGCAGGT ACCTGCGGCA GAATATAATC CTATGGAGTG TATTAAAACT
AACATCCATG GGGCTGAAAA TGTCATTCGG GCTGCAATCA GTAATAATGT TGTCAAGGTT
ATTGCACTAT CAACTGATAA AGCGGCAAGC CCGATTAATC TCTATGGCGC GACAAAGTTA
GCGTCAGATA AGCTGTTTGT TGCTGCAAAC AACGTCGTCG GAGATGGTAA AACACGATTC
GCTGCAGTCC GCTACGGTAA CGTCGTGGGA TCGAGAGGTT CAGTAGTTCC TTTCTTTAAG
CAATTAATTG CAAATGGAGC CACTTCGCTA CCTATTACTC ATCCAGATAT GACGCGATTC
TGGATCACCC TTCAAGAGGG TGTCGATTTT GTGCTAAAGA ATTTTTCCCG TATGCAAGGG
GGGGAGATCT TCGTGCCAAA AATTCCTTCT ATTCGTATTA CCGATCTTGC TGCAGCCTAT
GGACCGAGTT TAGAACAAAA GATTGTAGGA ATTCGTCCAG GGGAAAAAAT GCATGAGGTA
ATGTGTCCAG GGGATGATTC GCACCACACC ATAGAATTTG ACGACCATTT TGTGATTACT
CCTAGCATCA AGTTTTTTGG ACGTGAAACG GATTTTTCTA CCAATTCCCT TGGAGAGAAA
GGCACGTTGG TGGCTGCCGG TTTTGAATAT AACTCCGGAA ACAACAGTCA TTTTTTGAAT
GTGAATGAGA TCCTTGATAT GGACGCTTTA GCATGA
|
|---|
| Protein sequence | MFDNKTILIT GGTGSFGQKY TKTILERYKP KRLIIFSRDE LKQYEMQQVF NAPCMRYFIG
DVRDGDRLKQ AFKDVDFVIH AAALKQVPAA EYNPMECIKT NIHGAENVIR AAISNNVVKV
IALSTDKAAS PINLYGATKL ASDKLFVAAN NVVGDGKTRF AAVRYGNVVG SRGSVVPFFK
QLIANGATSL PITHPDMTRF WITLQEGVDF VLKNFSRMQG GEIFVPKIPS IRITDLAAAY
GPSLEQKIVG IRPGEKMHEV MCPGDDSHHT IEFDDHFVIT PSIKFFGRET DFSTNSLGEK
GTLVAAGFEY NSGNNSHFLN VNEILDMDAL A
|
|---|
| |