| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1285 |
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| Symbol | |
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| ID | 4479859 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | + |
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| Start bp | 1495263 |
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| End bp | 1497713 |
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| Gene Length | 2451 bp |
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| Protein Length | 816 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 639725839 |
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| Product | conjugal transfer ATPase TrbE |
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| Protein accession | YP_868925 |
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| Protein GI | 117919733 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGAACC TTGCCGAATA CCGCCAGCGG CCCGCGCTGC TGGCCGACTG GCTTCCCTGG
GCCGGGCTGA TCGCGCCGGG CGTTGTGCTG AACAAGGATG GCTCTTTCCA GCGCACGGCA
CGTTTTCGCG GGCCGGACTT GGACAGCGCC ACGCAAGGCG AGTTGATCGC CGCATCCGCG
CGGCTCAACA ACGCGCTGCG CCGCCTGGGT TCGGGCTGGG CCTTGTTCAT CGAGGCCGAG
CGCCGACCGG CTGCGGGCTA TCCGCACTCG GATTTTCCCG AGCCGCTGTC CTGGTTGGTG
GACGAGGAAC GCCGCGCCGC CTTCGAGGAA TCGGGCCATC ACTTCGAGAG CGGTTATCAC
CTGACGATGG TGTTTCTCCC GCCGGAGGAA TCGCGCGCCC GCGCTGCCAA GCTGCTCTAC
GAGAACTCGC CCGGCGACGG CGTGGACTGG CGTGGTCGGC TCGATGCCTT CGTGGCTGAA
ACCGATCGCG TGTTCGATCT GCTCGATGGC GTGATGCCGG AAATCGCCTG GCTCGATGAC
GACGACACGC TGACCGGCCT GCACGCGACG GTTTCGACGC GGCGCTACCG GCTCGGCGTA
CCCGAAGTAC CGTTCCATAT CGACGCGCTA CTGGCCGACT GCGCCCTGGT CGGTGGCCTT
GCGCCGATGC TGGGCGACCA GCACCTGCGG GTGGTGTCGG TGCGTGGCTT TCCGACCTCG
ACCTGGCCGG GGATTCTGGA CGACCTCAAC CGCCTGGGCT TTGGCTACCG CTGGAGCACA
CGCTTTCTCT GCATGGACAA AGCCGAGGCC GAAAAGGAAC TCGGCCGCCT GCGCCGCCAG
TGGTTCGCCA AGCGCAAGAA CGTCGTCGCA CTGCTGCGCG AAACGATCTT CCAGCAGGAA
AGCCCGCTGG TGGATACCGA CGCCAGCAAC AAGGCCGCCG ACGCCGATGC GGCCTTGCAG
GAGTTGGGCA GCGATCAAGT CGCGTTCGGC TATCTCACCG CCACGGTGAC AGTGCTCGAC
GCCGACCCGG CAGTGGCCGA CGAGAAGCTG CGCATGGTGG AGCGCGTCAT CCAGGGTCGG
GGCTTCGTGA CGATTCCCGA AACCTTGAAC GCGGTCGATG CCTGGCTGTC GTCCATCCCC
GGCAACGCTT ACGCGAACGT GCGCCAGCCC ATCTTCTCGA CGCTGAACCT GGCGCACATG
ATGCCGCTGT CGGCGGTGTG GGCCGGGCCG GAGAAGAACG ACCATCTGGA CGGCCCGCCG
CTGATCGTCA CCCGCACCGA TGGCGCGACG CCTTTTCGCT TGGTCACGCA CATCGGCGAC
GTGGGCCACA CACTGGTCGC CGGGCCGACC GGCATGGGCA AGTCGGTACT GCTTGCCATT
CTGGCCATGC AGTTCCGGCG CTACTTCGGC TCGCGGATCT TCGCCTTCGA CATGGGCCGC
TCCATGCGTG CCACCATCCT CGGCCTCGGC GGCGAACACT ACGACCTCGG CGCCGATGGC
GGCATCGCCT TTCAGCCGTT GGCCCGTATC GACAGCGAGG GCTACCGCAC CTGGGCGGCT
GAATGGGTGG AAGGCCGGCT ACTGCACGAA GGCGTGACCG TCGGCCCCGA CGAGAAGGCA
GCCATCTGGT CGGCGCTGGG TAGCCTCGCC GGTGCGCCGG TGGAACAGCG CACGCTGACC
GGGCTTTCCG TGCTGCTGCA ATCGAACGCG CTACGGCAAG CGCTGTCGCC CTATGTGCTT
GGCGGCGCCC ACGGCAAGCT GCTGGACGCC GACCGCGACC GGCTGGGCAT GGCCGACGTG
CAGGGCTTCG AGATGGAAGA ACTGATGCAC AGCCCCGCCG CCGTGCAAGC GGTGCTGCGC
TACCTGTTCG CCCGCTTCGA TGAGCGTTTC GATGGTGCGC CCACGCTGCT GATTCTGGAT
GAAGCCTGGC TGTTCCTCGA TGAGCCATCT TTCGCGGCCC GCATCCGGCA ATGGCTCAAG
ACGCTCAGGA AAAAGAACGT CAGCGTCATC TTCGCCACGC AGAGCCTGGC AGACATCAAG
GACTCGACCA TCGCGCCCGC GATCATCGAG AGCTGCGCCA GTCGGATTTT CTTGCCTAAC
CCGCAGGCGA CCGAGCCGCA GATTCGCACG ATCTATGAGG GTTTCGGGCT CAACAGCCGG
CAGATCGAGA TCGTCGCCAC CGCGCAGCCC AAGCGCGACT ACTACTACCA GTCGCGTCTC
GGCAACCGCC TATTCGACCT CGACCTGGGG CCGTTGGCGC TCGCCTTCGC GGGCGCATCC
ACCCCTCAAG ACCAACGCGA CATCGACCGC GTGTTGACGC AGGCCGGCGC CCCCGGCTTC
ACCGGCGCGT GGCTGCGCCA TCGCGGCCTC GACTGGGCCG CCGACCTGCT GCCGTCCTCA
CCGGCGGCCG CTTCGTTTCT CAACTCCCAA CCACTGGAGG TTTCACCATG A
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| Protein sequence | MLNLAEYRQR PALLADWLPW AGLIAPGVVL NKDGSFQRTA RFRGPDLDSA TQGELIAASA
RLNNALRRLG SGWALFIEAE RRPAAGYPHS DFPEPLSWLV DEERRAAFEE SGHHFESGYH
LTMVFLPPEE SRARAAKLLY ENSPGDGVDW RGRLDAFVAE TDRVFDLLDG VMPEIAWLDD
DDTLTGLHAT VSTRRYRLGV PEVPFHIDAL LADCALVGGL APMLGDQHLR VVSVRGFPTS
TWPGILDDLN RLGFGYRWST RFLCMDKAEA EKELGRLRRQ WFAKRKNVVA LLRETIFQQE
SPLVDTDASN KAADADAALQ ELGSDQVAFG YLTATVTVLD ADPAVADEKL RMVERVIQGR
GFVTIPETLN AVDAWLSSIP GNAYANVRQP IFSTLNLAHM MPLSAVWAGP EKNDHLDGPP
LIVTRTDGAT PFRLVTHIGD VGHTLVAGPT GMGKSVLLAI LAMQFRRYFG SRIFAFDMGR
SMRATILGLG GEHYDLGADG GIAFQPLARI DSEGYRTWAA EWVEGRLLHE GVTVGPDEKA
AIWSALGSLA GAPVEQRTLT GLSVLLQSNA LRQALSPYVL GGAHGKLLDA DRDRLGMADV
QGFEMEELMH SPAAVQAVLR YLFARFDERF DGAPTLLILD EAWLFLDEPS FAARIRQWLK
TLRKKNVSVI FATQSLADIK DSTIAPAIIE SCASRIFLPN PQATEPQIRT IYEGFGLNSR
QIEIVATAQP KRDYYYQSRL GNRLFDLDLG PLALAFAGAS TPQDQRDIDR VLTQAGAPGF
TGAWLRHRGL DWAADLLPSS PAAASFLNSQ PLEVSP
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