Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_1196 |
Symbol | |
ID | 4478713 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | + |
Start bp | 1403024 |
End bp | 1404136 |
Gene Length | 1113 bp |
Protein Length | 370 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 639725751 |
Product | twitching motility protein |
Protein accession | YP_868837 |
Protein GI | 117919645 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG5008] Tfp pilus assembly protein, ATPase PilU |
TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0761458 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.595068 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATGTCC GTCCGTTTTT AAAAGTCATG GTGGAGCGTA AAGCCTCGGA CTTGTTTATT ACCGCAGGTT TTCCGCCAAG CGCCAAAATC GATGGCGAGT TACGCCCATT AGCCGAGAGT GCCTTCACGC CCGCGCAGTC TTTGGATTTT GTCGAATCTG TAATGACTGA GGCGCAAAAG AAGGAGTTTC ACAGCACTCG CGAGTGTAAC TTTGCTTTTG CGGTTAAGGA TTTAGGGCGT TTCCGCGTCA GCGCATTCTG GCAGCGTGAA TCTCCGGGAT GCGTTATGCG CCGGATTGAG ACCAAGATCC CTGAGGTAGA GGACTTAAAA CTGCCACCGA TTTTAAAAGA TCTGGTGATG AGTAAACGGG GTCTTATCAT CATGGTCGGG GGGACGGGAA CCGGTAAGTC GACCTCCTTG GCGGCGTTAG TGGGTTATCG TAACGCCCAT GCCCGTGGTC ATATCCTCAC CATCGAAGAC CCAGTGGAAT TTGTGCACGA TCATCGCAAA AGTATCATCA CTCAACGCGA AGTGGGTATA GATACAGAAT CCTTTGATGC GGCGTTGAAG AGTTCGCTGC GTCAGGCGCC CGATGTGATT TTGATTGGTG AGATCCGTAC TCAAGAAACC ATGGAGTTTG CGCTCTCCTT CGCCGAAACG GGTCACCTCT GTATGGCGAC ATTGCACGCA AACAACGCTA ACCAAGCGTT AGACCGGATC ATGCACTTAG TGCCTGAGAG TAAACACCAG CAGTTGCTAT TCGACTTGTC ACTCAACCTG CGCGGCATTG TGGCGCAGCA ACTGGTGCCT AAGGTTGATG GTACAGGACG ACGGGCAGCG ATTGAAGTCT TGATCAATAC GCCACGTGTC GCGAGCTTGA TTGCTAAAAA CGAGCTGCAT TTGCTTAAAG AAACTATGGC TAAATCGAAT GAGCAGGGGA TGCAGACCTT CGACCAAGCC TTGCTGCAAC TCTATATCGA TGGGGAAATC AGCTATGCCG ATGCGCTTCA CCATGCTGAC TCGCCAAACG ACTTACGTTT AATGATCAAA TTGCAAAATA AAGAGCCTAC CAGTTCAAGC TTTATGGAAG GCGTGACCTT GGATATGGAT TAA
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Protein sequence | MDVRPFLKVM VERKASDLFI TAGFPPSAKI DGELRPLAES AFTPAQSLDF VESVMTEAQK KEFHSTRECN FAFAVKDLGR FRVSAFWQRE SPGCVMRRIE TKIPEVEDLK LPPILKDLVM SKRGLIIMVG GTGTGKSTSL AALVGYRNAH ARGHILTIED PVEFVHDHRK SIITQREVGI DTESFDAALK SSLRQAPDVI LIGEIRTQET MEFALSFAET GHLCMATLHA NNANQALDRI MHLVPESKHQ QLLFDLSLNL RGIVAQQLVP KVDGTGRRAA IEVLINTPRV ASLIAKNELH LLKETMAKSN EQGMQTFDQA LLQLYIDGEI SYADALHHAD SPNDLRLMIK LQNKEPTSSS FMEGVTLDMD
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