| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0894 |
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| Symbol | |
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| ID | 4477105 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | + |
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| Start bp | 1041198 |
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| End bp | 1042646 |
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| Gene Length | 1449 bp |
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| Protein Length | 482 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 639725430 |
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| Product | diguanylate cyclase with PAS/PAC and GAF sensors |
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| Protein accession | YP_868538 |
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| Protein GI | 117919346 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2202] FOG: PAS/PAC domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.156047 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCCTCAGT ATGATGATGT AAATGAGCCG CAGGCATGGT TGGAGAGTTG TGTGAAAAAC
GATGGTTATA CTTCCCTAAG CCAATTTGTT GATCTGCTAT TGGATGCCAT CTGTGTCGTC
GATAAAACGG GGCACTTTGA GTTTGTTAGT GCGGGGGCCG AACGTATTTT TGGCTATACC
CCGGACGAAA TGCTCGGCAT GCAGATGTTA GATCTTGTCT ATCCACCGGA CAGGGAACGG
ACTCTCGCCG CAGCCAATGA CATCATGGAA GGGCGTTTTA AGCTCGACTT TGAAAACCGT
TATGTACGAA AGGACGGTAC TCTTGTCGAT ATTCTTTGGT CCGCCCGTTG GTCCGAGGAC
CGTCAGCAGC GGATTGCCGT GGCTCGTGAT ATCACTAAGA ATAAAATTGC CGAGCGGCGC
CAAGCCGCGC TCTATGAAAT TTCAGAAGCC GTGCATGTGG CCGAAGATCT CTTAGCCCTG
TATCGGCATA TTCATCAGAT CATGGCCAAG TTATTACCGG CGGCGAATTT TGCCATTGCG
CTTTATGATC AAGATCTTAA TGACCTGGAT TTTCCTTATC GTGTTGGGGT TGGCGAGCAG
AATCGGGCGC AGTGTGCCAG CTTCGATCTG TTTACCGAGC AAGTGATCCA AAGCGCCGAG
TCTCTGCTGA TTTGTCCGGT TGCCATGCCA GTTTCCCATG CTCAGGAGCA AGATTTTCAA
AATCAACCTA TTAGCTGGCT TGGGGTCCCG TTAAAGCTAC AAAAGGGCAT AATTGGCGCG
CTGATCATGC ATAGCACTCC GGATTCTCGG GCCTACACTA AGCAAGATTG CGAGCTGGTG
GAATTTGTGT CGACCCAAAT TGCCTTTGCG ATTGAGCGGC GGCAGATGTT GGCGCGTTTA
GAGCATATTG CGCTTTATGA CCAACTCACC CATTTGCCAA ATCGTGAGTT GTTTTATGAC
AGATTCCAGA AGGCGCTATC ACGCGCGAAT CGTGAGTCGA GCTATTTCTC CTTACTCTAT
TTGGACTTAG ACAAGTTTAA ATGGGTGAAT GATACCTATG GCCATGGTGT GGGCGACTTG
TTACTGCAAA TCACCGCCCA GCGGATTTTG GGATGCGTCA GAAACTCGGA TACGGTTGCT
CGTTTTGGTG GCGATGAGTT TGTGATCCTA TTGGAACGTG TCGATTCGGC GCAGAATACC
CTGCTCGTTG CCCAAAAAAT TCTTGAAGTG CTTAACCACC CCTTCGAATT AGTCAATCAA
CAGATCCATA TTTTGCCCAG CATAGGCATT GCCCTTTATC CCGAACATGG TAAGGATGAA
AAACAGCTGC TGTCCTGCGC CGATTCGGCG ATGTATAAGG CGAAGCGTAA TGGGGGGAAT
CGGGTTGAAA TGGGCTATCA AGGCTTAAAG ACCTGCTATT TTGAATCCTT GAGCCCGCAT
CATCTCTAA
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| Protein sequence | MPQYDDVNEP QAWLESCVKN DGYTSLSQFV DLLLDAICVV DKTGHFEFVS AGAERIFGYT
PDEMLGMQML DLVYPPDRER TLAAANDIME GRFKLDFENR YVRKDGTLVD ILWSARWSED
RQQRIAVARD ITKNKIAERR QAALYEISEA VHVAEDLLAL YRHIHQIMAK LLPAANFAIA
LYDQDLNDLD FPYRVGVGEQ NRAQCASFDL FTEQVIQSAE SLLICPVAMP VSHAQEQDFQ
NQPISWLGVP LKLQKGIIGA LIMHSTPDSR AYTKQDCELV EFVSTQIAFA IERRQMLARL
EHIALYDQLT HLPNRELFYD RFQKALSRAN RESSYFSLLY LDLDKFKWVN DTYGHGVGDL
LLQITAQRIL GCVRNSDTVA RFGGDEFVIL LERVDSAQNT LLVAQKILEV LNHPFELVNQ
QIHILPSIGI ALYPEHGKDE KQLLSCADSA MYKAKRNGGN RVEMGYQGLK TCYFESLSPH
HL
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