| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0234 |
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| Symbol | |
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| ID | 4476479 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | + |
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| Start bp | 263235 |
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| End bp | 265214 |
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| Gene Length | 1980 bp |
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| Protein Length | 659 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 639724763 |
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| Product | cytochrome c-type biogenesis protein CcmF |
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| Protein accession | YP_867884 |
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| Protein GI | 117918692 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1138] Cytochrome c biogenesis factor |
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| TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF
[TIGR03145] cytochrome c nitrate reductase biogenesis protein NrfE |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0552796 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.0000000000976147 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGATCCCAG AACTTGGACA CTTTTCGCTG ATTATAGGAG TGGCATTCGC CTTCTTATTA
GTCAGCGTTC CCCTTATAGG TGTTGCCCGT AAAGACCAAT ATCTAGTGAG GTATGCTTGG
CCGTTAACCT ACGGAATGTT CTTTTTTATC GCTTTATCCG TAGTATCTCT TGGTTACAGC
TTCGCCGTTG ATGACTTCTC CGTTGCCTAT GTGGCACATC ACTCGAACTC CCAGTTACCT
ATCTTCTTTA AGATTGCGGC CGTATGGGGC GGTCATGAAG GGTCACTGCT GTTCTGGGTG
TTTGCGCTAT CGACCTGGGC GGCTTCGGTT GCCTTATTCA GTAAAGGCTT AGAAGAAGTG
TTCACCGCTA GGGTTTTAGC TGTACTGGCG CTGATCGTGA TTGGCTTTAG CTTATTTATG
CTACTCACCT CTAGCCCATT TGAACGCCTA TTCCCAATGC CAGCCGAAGG TCGTGACTTA
AACCCAATGC TGCAGGACGT GGGCTTAATC TTCCATCCAC CTATGCTGTA CTTAGGTTAT
GTGGGCTTCT CGGTAAGCTT CGCGTTTGCG ATTGCAGCTC TGATGAGTGG TCACCTTGAC
TCTGCATGGG CACGTTGGTC ACGTCCTTGG ACTTTAGCCG CTTGGATTTT CCTCACAGGC
GGTATTGCAT TAGGTTCTTG GTGGGCATAC TACGAATTAG GCTGGGGTGG CTGGTGGTTC
TGGGATCCCG TAGAAAACGC TTCCTTTATG CCTTGGTTAG TCGGTACAGC ATTAGTGCAT
TCACTGATCG TGACCGAAAA ACGTGGTGCG TTCCGTAACT GGACCGTATT ACTGTCTATC
TTCGCGTTCT CTTTAAGCTT ACTCGGTACC TTTATCGTGC GTTCGGGTGT ATTGACCTCA
GTACACTCCT TCGCAGCCGA TCCAAGCCGC GGTATGTTCA TTCTGTTACT GCTGGGTCTT
GCGATTGGTG GTTCACTCAC GCTGTTCGCC TTCCGCGCCA GTGAAATGAG CAGCCCTGCA
CGTTTCGAGC TGAAATCAAA AGAAACCATG CTGTTAGTCT GTAACGTGTT ACTCACGGTT
GCAGCGGGTA CTGTGTTGTT AGGAACTCTA TATCCACTGC TGATCGATGC CTTAGGCATG
GGTAAGATTT CTGTTGGACC TCCATACTTC AATGCTGTGT TTGTGCCTAT CGTCCTCGTA
CTGTTTGGCT TTATGGGTGT CGGTCCAATC ATCCGCTGGA AGAAATCCAA AGCCGGTGAG
CTCAAACGTC AATTACTGGT GCCTGCATTA GTCTCTGCAG CGATTGGTAT CGTGACACCG
TTTATTGTGG ATGGTGCGTT CAACGCTTGG GTTGCCTGTG GTATCGCCGC TGCGTCTTGG
ATTGTGTTAG CGACGGCAAG AGCCGCGTAT AACATCGTTA AGCCAAAAGA AGGCGAAGTG
AGCGTGGCAC GTATGGGCCG CAGCGAACTA GGGATGATCT TAGCCCACTT AGGTATTGCC
GTGTCGGTGA TTGGTGCCAC TATGGTATCG AACTACTCGG TTGAGAAGAG TGTGCGTATG
GGCCCAGGCG TGAGCCAAGA GCTTGCGGGC TATACCTTTA AGTATCTCGA GACTAAGAAC
GTCGTAGGTC CTAACTACAC CGCGCAACAA GGTCAAATTG AGATCTACAA AGGCGATAAA
CTGCTGACGT TGCTCAAGCC TGATCGTCGC CAATACAATG TGCGTACTAT GGACATGACC
GAAGCGGGTA TCGATTGGGG TCTGTTCCGT GACTTATATG TCACCATGGG CGACCCAATC
AGCAGCACTG AGTTTGCTGT GCGTTTGAAC TACAAGCCAT TTGTTCGTTG GTTATGGTTT
GGAGCAATAT TCATGATGGT TGGTGGTTTC TTCGCCGCAT CGGATAAACG CTATCGCTCA
AAAGTGGCGG CTACGGTTAA GCCACAAGCT GAAAAAGCGA AATTAGCTAC CGCGCAATAG
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| Protein sequence | MIPELGHFSL IIGVAFAFLL VSVPLIGVAR KDQYLVRYAW PLTYGMFFFI ALSVVSLGYS
FAVDDFSVAY VAHHSNSQLP IFFKIAAVWG GHEGSLLFWV FALSTWAASV ALFSKGLEEV
FTARVLAVLA LIVIGFSLFM LLTSSPFERL FPMPAEGRDL NPMLQDVGLI FHPPMLYLGY
VGFSVSFAFA IAALMSGHLD SAWARWSRPW TLAAWIFLTG GIALGSWWAY YELGWGGWWF
WDPVENASFM PWLVGTALVH SLIVTEKRGA FRNWTVLLSI FAFSLSLLGT FIVRSGVLTS
VHSFAADPSR GMFILLLLGL AIGGSLTLFA FRASEMSSPA RFELKSKETM LLVCNVLLTV
AAGTVLLGTL YPLLIDALGM GKISVGPPYF NAVFVPIVLV LFGFMGVGPI IRWKKSKAGE
LKRQLLVPAL VSAAIGIVTP FIVDGAFNAW VACGIAAASW IVLATARAAY NIVKPKEGEV
SVARMGRSEL GMILAHLGIA VSVIGATMVS NYSVEKSVRM GPGVSQELAG YTFKYLETKN
VVGPNYTAQQ GQIEIYKGDK LLTLLKPDRR QYNVRTMDMT EAGIDWGLFR DLYVTMGDPI
SSTEFAVRLN YKPFVRWLWF GAIFMMVGGF FAASDKRYRS KVAATVKPQA EKAKLATAQ
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