| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0004 |
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| Symbol | |
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| ID | 4477443 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | + |
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| Start bp | 3725 |
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| End bp | 5272 |
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| Gene Length | 1548 bp |
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| Protein Length | 515 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 639724520 |
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| Product | TGF-beta receptor, type I/II extracellular region |
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| Protein accession | YP_867655 |
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| Protein GI | 117918463 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG3104] Dipeptide/tripeptide permease |
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| TIGRFAM ID | [TIGR00924] amino acid/peptide transporter (Peptide:H+ symporter), bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00000099426 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACTACTC CTGCCGATGC GCCAAAGTGG CCACGCCAAA TACCCTATAT TATTGCCAGT
GAAGCGTGTG AGCGTTTCAG TTTTTATGGC ATGCGCAACA TTCTAACACC ATTCTTGATG
ACGGCACTTT TGCTCTCTAT TCCCGAAGAT CTTCGCGGAG CGGTGGCAAA GGATGTGTTC
CATTCGTTCG TCATTGGGGT GTATTTTTTC CCCTTACTCG GTGGTTGGAT TGCAGATAGA
TTCTTTGGTA AGTACAACAC TATTCTGTGG TTAAGCTTAC TTTACTGTGT GGGCCATGCG
TTTTTGGCAA TTTTTGAGCA CAGTGTGCAA GGCTTTTACA CCGGCTTATT TTTAATTGCC
TTAGGTTCAG GCGGGATTAA ACCTTTAGTT TCTTCGTTTA TGGGCGATCA GTTTGATCAG
AGTAACAAGT CTTTGGCGCA AAAGGCCTTC GATATGTTCT ATTTTACGAT CAACTTTGGG
TCCTTCTTCG CATCCTTATC TATGCCATTG TTACTCAAGA ATTTTGGCGC AGCTGTGGCT
TTCGGGATCC CCGGTGTGTT GATGTTTATC GCCACGGTAT TTTTCTGGTT AGGCCGCAAA
CGTTATGTGC ATATGCCGCC AGAACCAAAG GATCCCCATG GATTTTTACC TGTGATCCGC
AGCGCCTTGC TTACTAAGGC CGAAGGCAAA GCCAATATCG GTTTAGTGTT AGCCCTAATT
GGTGGTGTTT CAGCCGCTTA TGCGCTGGTG AATATTCCGA CCCTAGGGAT TGTGGCTGGT
TTGTGTAGCG CTATGGTGCT GCTGATGGGA TTTGTTGGTT TTGGGGCGTC ATTGCAGCTT
GAGCGCGCTA GGGGAGTTCA CCCTGATGCG GCCGTGGATG GCGTACGTTC AGTGCTACGT
ATTTTGGTGT TGTTCGCCTT AGTCACGCCA TTTTGGTCCT TATTCGATCA AAAGGCGTCG
ACTTGGATTT TGCAGGCTAA CGATATGGTT AAACCTTCGT GGTTTGAACC TGCGATGATG
CAGGCATTAA ACCCGCTGTT AGTGATGCTG TTGATTCCAT TCAATAACTT CGTGTTATAT
CCTGCTATTG AGCGTATGGG CGTGAAATTA ACTGCGCTGC GTAAAATGGG CGCGGGGATC
GCGATAACTG GCTTAAGCTG GATTGTGGTT GGGACGATTC AGTTGATGAT GGACGGTGGC
TCGGCGCTGT CTATCTTCTG GCAGATTTTA CCCTACGCCT TACTGACTTT TGGTGAAGTA
TTAGTTTCGG CAACGGGTTT AGAATTTGCC TACAGCCAAG CACCTAAGGC TATGAAAGGC
ACTATTATGA GTTTTTGGAC CTTATCGGTG ACCGTCGGTA ACCTTTGGGT ATTACTCGCC
AATGTGAGCG TAAAAAGCCC TGCGGTGACG GAACAAATTG TTCAAACCGG GATGAGTGTG
ACGGCATTCC AAATGTTCTT CTTTGCGGGA TTTGCGATCT TGGCGGCTGC CATCTTCGCG
CTCTATGCTC GGTCCTATCA AATGCAGGAC CATTATCGCC AAGTTTAG
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| Protein sequence | MTTPADAPKW PRQIPYIIAS EACERFSFYG MRNILTPFLM TALLLSIPED LRGAVAKDVF
HSFVIGVYFF PLLGGWIADR FFGKYNTILW LSLLYCVGHA FLAIFEHSVQ GFYTGLFLIA
LGSGGIKPLV SSFMGDQFDQ SNKSLAQKAF DMFYFTINFG SFFASLSMPL LLKNFGAAVA
FGIPGVLMFI ATVFFWLGRK RYVHMPPEPK DPHGFLPVIR SALLTKAEGK ANIGLVLALI
GGVSAAYALV NIPTLGIVAG LCSAMVLLMG FVGFGASLQL ERARGVHPDA AVDGVRSVLR
ILVLFALVTP FWSLFDQKAS TWILQANDMV KPSWFEPAMM QALNPLLVML LIPFNNFVLY
PAIERMGVKL TALRKMGAGI AITGLSWIVV GTIQLMMDGG SALSIFWQIL PYALLTFGEV
LVSATGLEFA YSQAPKAMKG TIMSFWTLSV TVGNLWVLLA NVSVKSPAVT EQIVQTGMSV
TAFQMFFFAG FAILAAAIFA LYARSYQMQD HYRQV
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