| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3637 |
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| Symbol | ompR |
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| ID | 4922390 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 4337617 |
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| End bp | 4338342 |
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| Gene Length | 726 bp |
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| Protein Length | 241 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640165259 |
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| Product | osmolarity response regulator |
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| Protein accession | YP_001095762 |
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| Protein GI | 127514565 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGGACAAG AAACCTCTAA AATTCTCGTT GTCGATGATG ATATGCGCCT AAGAGCCCTG
CTAGAGCGTT ACCTGATGGA ACAGGGTTAC CAGGTCAGGA GCGCCGCCAA TGCCGAGCAG
ATGGACAGGC TGCTGGAGCG GGAAAACTTC CACCTGCTGG TGCTGGATCT TATGCTGCCT
GGCGAGGATG GCCTCTCTAT CTGTCGTCGC CTGCGCCAAA ATGGCAATAC GATTCCCATA
GTTATGCTGA CCGCCAAGGG TGACGAGGTG GACCGCATCA TAGGCCTGGA GCTGGGCGCC
GACGATTACC TGCCCAAGCC TTTCAACCCC AGAGAACTCC TGGCTCGCAT CAAGGCGGTC
ATGCGTCGTC AGGCCCCAGA GGTCCCAGGC GCGCCGACAC AGCAGGAAGA GGAGATCACC
TTCGGTGAAT TTACCCTTAA CCTGGCCACC CGCGAGATGT ACCACGGCGA AGAGGCAATA
TCCCTTACCA GCGGCGAATT TGCCGTGCTC AAGGTGTTGG TGAGTCACCC CAGAGAACCG
CTGTCGCGGG ATAAGTTGAT GAACCTGGCC CGCGGCCGTG ACTATTCGGC GCTGGAGCGC
TCCATCGACG TACAGGTATC GCGCCTGCGT CGCCTGATCG AGAAAGATGC CGCCAACCCA
AGATATATCC AGACCGTTTG GGGCCTGGGC TATGTGTTTG TGCCCGACGG TGCCGCGCGG
CGTTAG
|
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| Protein sequence | MGQETSKILV VDDDMRLRAL LERYLMEQGY QVRSAANAEQ MDRLLERENF HLLVLDLMLP
GEDGLSICRR LRQNGNTIPI VMLTAKGDEV DRIIGLELGA DDYLPKPFNP RELLARIKAV
MRRQAPEVPG APTQQEEEIT FGEFTLNLAT REMYHGEEAI SLTSGEFAVL KVLVSHPREP
LSRDKLMNLA RGRDYSALER SIDVQVSRLR RLIEKDAANP RYIQTVWGLG YVFVPDGAAR
R
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