| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3482 |
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| Symbol | |
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| ID | 4923160 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 4167530 |
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| End bp | 4168726 |
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| Gene Length | 1197 bp |
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| Protein Length | 398 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640165104 |
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| Product | phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase |
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| Protein accession | YP_001095607 |
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| Protein GI | 127514410 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0452] Phosphopantothenoylcysteine synthetase/decarboxylase |
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| TIGRFAM ID | [TIGR00521] phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000255093 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTCTAA CCAATAAAAA GATATTGCTG GGAATTGGCG GCGGCATTGC TGCTTATAAG
TCTGCCGATC TGGTCCGCCG CCTGAAAGAA CGCGGCGCCG ATGTACGTGT CGTCATGAGC
CAAAGCGCGC AAGAATTTAT TACGCCGCTG ACCCTGCAGG CACTGTCGGG ACATCCCATT
GCCACCGACC TGTTAGACCC GGCGGCCGAA GCCGCCATGG GGCATATCGA ACTCGCCCGC
TGGGCCGACT TAGTGTTGAT CGCTCCGGCA ACCGCCAACC TGATCGCCCG CATCAACGCC
GGCATGGCCG ATGAGTTAAT CACCACCACC TGCCTGGCCA CAGAAGCGCC TGTAGTGCTC
TGCCCGGCGA TGAATCAGCA GATGTATCGG AACGTCGCCA CCCAGGAAAA TCTGGACAAC
CTGAGAAAGC GTGGTCTCAC CATCTGGGGA CCGGCATCTG GTAGCCAGGC CTGTGGCGAA
GTCGGCCCAG GCCGCATGGA GGAGCCTCTG GTGATCGCCG AGCGCGTCGA ACACTTCTTT
GCGCCAAAGC TGCTTCAGGG AATATCGATA CTGCTGACGG CGGGCCCAAC CCGCGAAGCA
ATCGACCCCG TGCGTTACAT CTCTAATCAC AGCTCGGGCA AGATGGGCTT TGCCCTAGCA
CGCGCGGCGG CCGAGATGGG CGCTAAGGTG ACGCTGGTCT CCGGCCCGGT CAATCTTGAG
ACGCCGATGA ATGTCAATCG CCTCAACGTC GCCTCGACCC AGGAGATGCT CGACGCCGTG
ATGCAGCAGG TACACCACAG CGATATCTTC ATCGGCTGCG CTGCGGTCTG CGACTATCGC
ACCGCGGATA TTGCCGACGA GAAAATTAAG AAATCTGCCA CAGAGATGTC ACTTGCGCTT
GTACGCAATC CTGATATCTT AGCCACGGTC GCGGCCCATG AGGCACGTCC ATTCACGGTA
GGATTTGCCG CCGAGACCCA GGATGTAGAC CATTACGCCA AAGACAAGTT GACCCGCAAG
AAATTGGATA TGATCGCCGC CAATGACGTA TCCGACCCGG CCATCGGCTT CAACAGCGAT
AGCAATGCCT TGAAGGTTTT CTGGCAAGGA GGCGAGCACG CCCTGCCCGC CACAGATAAA
TATACCCTGG CGAAGCAACT ACTCACCCTA ATCGCACAGC AGATGAAGAC AGCATGA
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| Protein sequence | MSLTNKKILL GIGGGIAAYK SADLVRRLKE RGADVRVVMS QSAQEFITPL TLQALSGHPI
ATDLLDPAAE AAMGHIELAR WADLVLIAPA TANLIARINA GMADELITTT CLATEAPVVL
CPAMNQQMYR NVATQENLDN LRKRGLTIWG PASGSQACGE VGPGRMEEPL VIAERVEHFF
APKLLQGISI LLTAGPTREA IDPVRYISNH SSGKMGFALA RAAAEMGAKV TLVSGPVNLE
TPMNVNRLNV ASTQEMLDAV MQQVHHSDIF IGCAAVCDYR TADIADEKIK KSATEMSLAL
VRNPDILATV AAHEARPFTV GFAAETQDVD HYAKDKLTRK KLDMIAANDV SDPAIGFNSD
SNALKVFWQG GEHALPATDK YTLAKQLLTL IAQQMKTA
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