| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3440 |
|---|
| Symbol | |
|---|
| ID | 4923454 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 4108428 |
|---|
| End bp | 4109339 |
|---|
| Gene Length | 912 bp |
|---|
| Protein Length | 303 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640165052 |
|---|
| Product | prepilin peptidase |
|---|
| Protein accession | YP_001095565 |
|---|
| Protein GI | 127514368 |
|---|
| COG category | [N] Cell motility
[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1989] Type II secretory pathway, prepilin signal peptidase PulO and related peptidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.823823 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0376305 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGAAT TTATCCAATT AATGGCTCAG TACCCTTTGC TGTTTGCCGC AATTTCTTTT
GTCTTTGCAG CCGTGATTGG CAGCTTTTTA AATGTAGTCA TTCATCGCCT TCCGGTGATG
ATGAAAAGAG AATGGCAAGA GGAATGCAAC CAATATCTCG ACGAATACCA CAAGGCTACC
GTTACAGAAA TTAAAGATAA GCTAGCCCAG CCTATCGATG ATTTTCCGGA AAAATACAAT
CTTATCGTTC CTGGCTCATC TTGCCCTAAG TGTAAAACCG ATATAAAACC TTGGCACAAC
CTCCCCGTAA TTGGGTGGTT AATGTTAGGA GGTAAGTGCG CTCATTGTAA GACAAGTATT
TCTGTAAGGT ATCCCATCAT AGAGGCCTTA ACAGGATTTG CAGTGGCCTA CCTCGCTTAC
CATTTTGGCC CGACCTGGCA ATTTGTCTTT GCCACCTTGC TAACCTTCGG CCTGATAGCT
TTAACAGGGA TAGATCTCGA TGAAATGCTA TTACCTGATC AGATCACACT GCCACTGCTA
TGGCTAGGCC TACTTATAAA TCTAAATGGC ACCTATGTCT CGATTACAGA TGCGGTCATT
GGCGCTTCTG CAGGCTATAT GAGCCTTTGG AGCGTGTTCT GGGGATTCAA AATATTAACC
GGCAAGGAAG GTATGGGTTA TGGCGACTTT AAGCTATTAG CCGTATTCGG TGCCTGGTTT
GGCTGGCAAT TACTGCCCCT CATCATCCTG TTATCCTCCA TTGTTGGCGC ACTAGTTGGC
TTGCTGCTCA TCGTCAATAA GAAGATCAAT TCTGGCAATC CCATACCATT TGGCCCTTAT
ATCGCCTTAG CAGGCTGGAT AGCCATGATT TGGGGTGAGA ATATAGTAAA TTGGTACCTA
TCTACCTTAT AG
|
|---|
| Protein sequence | MTEFIQLMAQ YPLLFAAISF VFAAVIGSFL NVVIHRLPVM MKREWQEECN QYLDEYHKAT
VTEIKDKLAQ PIDDFPEKYN LIVPGSSCPK CKTDIKPWHN LPVIGWLMLG GKCAHCKTSI
SVRYPIIEAL TGFAVAYLAY HFGPTWQFVF ATLLTFGLIA LTGIDLDEML LPDQITLPLL
WLGLLINLNG TYVSITDAVI GASAGYMSLW SVFWGFKILT GKEGMGYGDF KLLAVFGAWF
GWQLLPLIIL LSSIVGALVG LLLIVNKKIN SGNPIPFGPY IALAGWIAMI WGENIVNWYL
STL
|
|---|
| |