| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3439 |
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| Symbol | |
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| ID | 4923453 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 4107121 |
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| End bp | 4108389 |
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| Gene Length | 1269 bp |
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| Protein Length | 422 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640165051 |
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| Product | type II secretion system protein |
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| Protein accession | YP_001095564 |
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| Protein GI | 127514367 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1459] Type II secretory pathway, component PulF |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0385589 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTACCG CATCGCTTGC TAAAACATCA ACTAAAAAGC AAAAAGCAGC CAAAGCTCAA
CCTAAAGTGG TCACTTTTGA ATGGAAGGGA ACTAACCGCG ACGGAAAAAA AACCTCAGGC
GAATTGAGAG GGACGTCACC TGCCGAAATA AAAGCACAAC TAAAATCGCA AGGCGTCAAC
CCAAAAGTTG TCAAAAAGAA AGCTGAACCT CTATTTAAGA GTGATCCAAA AATAAAGGCA
ATGGATATCG CCATGATCAC ACGCCAGATT GCGACAATGT TGGCGGCAGG TGTCCCCATT
GTAACAACCC TTGAGATGCT AGGGCGCGGT CACGAAAAGC CTAGAATGCG CGAGTTACTT
GGAACAATTG TGGCTGATGT GCAGTCCGGT ATACCACTAT CCGACTCTTT AAAACCCCAC
AGACAATATT TTGATGATCT TTACGTTGAT TTGGTTGGTG CTGGAGAACA CTCAGGTTCC
CTAGATGCCG TATTTGACAG AATTGCAACG TACAGAGAAA AAGCTGAAGC ACTAAAATCA
AAAATAAAAA AGGCAATGTT CTATCCTGCT GCCGTTATCG TTGTTGCTAT AGCTGTTACA
ACACTATTAT TGTTATTTGT TGTACCGCAG TTTGAAGACA TATTTGCTGG TTTTGGAGCT
GAGCTCCCGG CATTTACACA AATGATTGTA AGTATCTCGC GATGGCTTCA ATCTTCTTGG
TATTTTTTTG TAATAGGCAT AGTTGTCTCT ATTTGGTCAT TTAAAAAGGC TCATTTAAAA
TCGGCGGGAT TCCGAAATAA AGTAGATGAG CTAGTGCTGA AAATCCCAAT TATTGGTGAA
ATTTTACACA AGGCGGCAAT GGCAAGATTT GCGAGAACTT TAGCAACAAC CTTTGCAGCA
GGTGTTCCCC TAATTGATGG ACTAGAATCT GCCGCCGGAG CATCTGGTAA CTATGTCTAC
CGCAGCGCAC TTACGAAAGT TCGTACAGAG GTAATGTCTG GGATGCAAAT GAACGTCGCT
ATGCGTACCA CAGGACTTTT CCCGGACATG CTTATCCAAA TGGTTATGAT AGGTGAAGAA
TCTGGTGGCC TCGATGATAT GCTAAATAAG ATAGCGAACA TATATGAAAT GCAAGTAGAT
GACGCAGTTG ACGGATTATC TAGCTTAATT GAACCAATGA TGATGGTCGT CATTGGTACA
CTCGTTGGGG GGTTAATTAT AGGGATGTAC CTCCCTATCT TCCAGATGGG TAATGTCGTC
GGCGGCTAA
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| Protein sequence | MATASLAKTS TKKQKAAKAQ PKVVTFEWKG TNRDGKKTSG ELRGTSPAEI KAQLKSQGVN
PKVVKKKAEP LFKSDPKIKA MDIAMITRQI ATMLAAGVPI VTTLEMLGRG HEKPRMRELL
GTIVADVQSG IPLSDSLKPH RQYFDDLYVD LVGAGEHSGS LDAVFDRIAT YREKAEALKS
KIKKAMFYPA AVIVVAIAVT TLLLLFVVPQ FEDIFAGFGA ELPAFTQMIV SISRWLQSSW
YFFVIGIVVS IWSFKKAHLK SAGFRNKVDE LVLKIPIIGE ILHKAAMARF ARTLATTFAA
GVPLIDGLES AAGASGNYVY RSALTKVRTE VMSGMQMNVA MRTTGLFPDM LIQMVMIGEE
SGGLDDMLNK IANIYEMQVD DAVDGLSSLI EPMMMVVIGT LVGGLIIGMY LPIFQMGNVV
GG
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