| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3430 |
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| Symbol | |
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| ID | 4923510 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4093917 |
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| End bp | 4095869 |
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| Gene Length | 1953 bp |
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| Protein Length | 650 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640165042 |
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| Product | pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase |
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| Protein accession | YP_001095555 |
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| Protein GI | 127514358 |
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| COG category | [C] Energy production and conversion
[I] Lipid transport and metabolism |
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| COG ID | [COG0508] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes
[COG0511] Biotin carboxyl carrier protein |
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| TIGRFAM ID | [TIGR01348] pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGAAT TAAAAGAAGT TTTAGTCCCC GATATCGGTG GGGATGAAGT ACAGGTTATC
GAGATCTGTG CTGCGGTAGG CGATACCCTC GCCGCCGAAG AATCGATCAT TACCGTCGAA
AGCGACAAGG CGACCATGGA TATTCCTGCG CCTTTCGCCG GTAAGCTTGC CGAGATTAAG
GTAGCCGTGG GCGATACCGT CTCTGAAGGT ACACTTATCG CCATGATGGA AGCGGGTGAG
GCGCAGGCCG CCGAGCCTGC ACCAGCAGAA TCTGCACCTG TTGCCGCTCC AGCTGCACCC
GCTCCGGCAG CGCCTGTTGC TTCAGCGCCA GCCTCTGCAC AAGTGATTGA AGTGACAGTG
CCGGATATCG GCGATGCCTC AGATGTCGAC GTGATTGAAG TGCTGGTGGC CGTGGGCGAC
AGCATAAATG TCGACACAGG GCTTATCACG CTTGAAACTG ACAAGGCGAC CATGGAAGTA
CCTGCACCTG CAGCCGGTGT GGTGAAAGAG ATGAAAGTGG CCGTTGGTGA CAAGGTCTCT
CAAGGCTCTC TGGTTCTGAT GCTTGAGGTG AGCGGCGGTG AAGCTGCGGC TCCTGCGGCA
AGCGCGGCTC CAGCACCAAG CGCAGAGGCT GCGCCAGCGG CCGCTGCCAG CATCGAAGTG
AAAGAGATTA GCGTGCCCGA TATCGGCGAT GCGTCTGACG TCGATGTTAT CGAGGTATTG
GTTGCGGCCG GTGATGTGAT TGAGGCCGAC CAAGGCCTGA TCACCCTGGA AACCGACAAG
GCCACCATGG AAGTCCCTGC ACCGTTCGCC GGTAAGCTGG TTTCTGTGAC CGTTAAGGTG
GGCGACAAGG TTTCTCAGGG CAGCGTCATC GCGACCATAG AGACACAGTC GAGTGCGCCT
GTTGCCGCTC CTGCTCCGGC CGCTGCAGCA CCTGCGCCAG TTGCACAAGC CAGCGCACCA
GCGCCTGCGG CGAGCAAGCC GCCTGTGCCC CATCACCCGA GTGCCGGTAG CAAGCCGGTA
ACCGGTGCCG TACACGCCTC GCCAGCGGTT CGCCGTCTGG CTCGCGAGTT TGGTGCAGAC
CTGACTCAGG TAACTGGTAC TGGTCCTAAG GGACGTATTC TCAAGGAAGA CGTTCAGGCC
TTTATCAAGT ATGAACTGTC TCGTCCTAAA GCCTCTGCGG CCACTAGCGT GGGCGCCGGT
GAGGGGGGGC TGCAGGTGAT TGCAGCGCCT AAGGTTGATT TCGCTAAGTT CGGTGAAGTG
GAAGAAGTGC CGCTGAGCCG TATCCAGAAG ATATCTGGAC CTAACCTGCA CCGTAACTGG
GTCACTATTC CACACGTGAC TCAATTCGAC GAAGCCGACA TCACAGAGAT GGAAGCCTTC
CGTAAGCAGC AAAACGAGAT TGCCGCCAAG CAGAAGACTG GCGTTAAGAT CACGCCTCTG
GTCTTCATGA TGAAGGCGGT TGCCAAGACA CTGCAGCAGT TCCCAGTGTT TAACGCCAGC
CTGAGCGCCG ACGGTGAGTC GCTGATCAAG AAGAAGTACT ACCATATTGG TGTGGCGGTT
GATACGCCAA ACGGTCTGGT TGTGCCTGTG GTTCGTGATG TCGACAAGAA AGGCATCATA
GAGCTGTCGG CCGAACTGAT GGAGATCTCG GTTAAGGCCC GTGACGGCAA GCTGAAAGCG
GCCGACATGC AGGGTAGCTG TTTCACCATC TCTAGCCTGG GTGGCATCGG TGGTACGGCA
TTTACGCCTA TCGTTAACTA TCCTGACGTG GCGATCTTAG GGGTTTCTAA GTCTGAAATT
AAACCTAAGT GGAATGGTAA AGAGTTCGAG CCTAAGTTAA TGTTGCCGCT CTCTTTATCT
TACGACCACC GTGTGATCGA CGGCGCCATG GCGGCACGCT TCAGCGTGAC CCTGTCAAGT
ATGCTGTCCG ACATACGCAC ACTTATTTTG TAA
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| Protein sequence | MAELKEVLVP DIGGDEVQVI EICAAVGDTL AAEESIITVE SDKATMDIPA PFAGKLAEIK
VAVGDTVSEG TLIAMMEAGE AQAAEPAPAE SAPVAAPAAP APAAPVASAP ASAQVIEVTV
PDIGDASDVD VIEVLVAVGD SINVDTGLIT LETDKATMEV PAPAAGVVKE MKVAVGDKVS
QGSLVLMLEV SGGEAAAPAA SAAPAPSAEA APAAAASIEV KEISVPDIGD ASDVDVIEVL
VAAGDVIEAD QGLITLETDK ATMEVPAPFA GKLVSVTVKV GDKVSQGSVI ATIETQSSAP
VAAPAPAAAA PAPVAQASAP APAASKPPVP HHPSAGSKPV TGAVHASPAV RRLAREFGAD
LTQVTGTGPK GRILKEDVQA FIKYELSRPK ASAATSVGAG EGGLQVIAAP KVDFAKFGEV
EEVPLSRIQK ISGPNLHRNW VTIPHVTQFD EADITEMEAF RKQQNEIAAK QKTGVKITPL
VFMMKAVAKT LQQFPVFNAS LSADGESLIK KKYYHIGVAV DTPNGLVVPV VRDVDKKGII
ELSAELMEIS VKARDGKLKA ADMQGSCFTI SSLGGIGGTA FTPIVNYPDV AILGVSKSEI
KPKWNGKEFE PKLMLPLSLS YDHRVIDGAM AARFSVTLSS MLSDIRTLIL
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