| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3425 |
|---|
| Symbol | |
|---|
| ID | 4923505 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 4082485 |
|---|
| End bp | 4083156 |
|---|
| Gene Length | 672 bp |
|---|
| Protein Length | 223 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640165037 |
|---|
| Product | 2-deoxyglucose-6-phosphatase |
|---|
| Protein accession | YP_001095550 |
|---|
| Protein GI | 127514353 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0637] Predicted phosphatase/phosphohexomutase |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.000919178 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCAAA TAAATTTAGC GGCGGTCATC TTCGATATGG ATGGCGTGCT TATCGATTCC
GAGCCGAGTT GGCAGGCCGC CGAATACAAG GTGCTGAGCC AGCTGGGGCT ACCCATCAGC
CTCAGCGATA CCGAGCAGAC CACAGGGCTG CGCATCGACC AGGTAGTCGA GTACTGGTAT
CGACGCCACC CTTGGAAAGG CTATGACAAT GCGGCGACCG CCGAGGCGAT AGTCACGCAA
GTGGCCGGAG AGATCCTGAG TCACGGCGAG GTGATGTCCG GCGTTAAGGA GGCGCTCGAG
GCTTGCAAAC AGAGGGGACT CAAGCTTGGC CTGGCCACCT CATCGCCGAC GCTTTTGATC
GATGCCGTGA TGCAGAAGCT GGCAATCAGA GAGCTGTTCG ACGCCATCGT GAGCGCCGAG
GCGCTGGCCC TTGGCAAACC CCACCCAGAG GTGTACCTCA ACTGCGCCAA GGCCCTAGGC
GTGACGCCTT CGCAATGCCT GGCGGTAGAA GACTCCTTCA ACGGCCTGAT CGCCGCGAGG
GCCGCCAACA TGCACACTGT GGTGATCCCG GCGCCCCATG AGGCGAGCCA GGCCAGATGG
GCCGCCGCCC ACCAGCAGCT CACCAGCCTC AAGGAGTTTG CCGACTACCT GGCACAATGC
GCCGCTAAAT AG
|
|---|
| Protein sequence | MSQINLAAVI FDMDGVLIDS EPSWQAAEYK VLSQLGLPIS LSDTEQTTGL RIDQVVEYWY
RRHPWKGYDN AATAEAIVTQ VAGEILSHGE VMSGVKEALE ACKQRGLKLG LATSSPTLLI
DAVMQKLAIR ELFDAIVSAE ALALGKPHPE VYLNCAKALG VTPSQCLAVE DSFNGLIAAR
AANMHTVVIP APHEASQARW AAAHQQLTSL KEFADYLAQC AAK
|
|---|
| |