| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3348 |
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| Symbol | |
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| ID | 4922189 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3993368 |
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| End bp | 3994309 |
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| Gene Length | 942 bp |
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| Protein Length | 313 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640164960 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_001095473 |
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| Protein GI | 127514276 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0242654 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGCTC CTTCATCTTT AGGCCTTTCT GTCATGGTTC GCGCGGCTCA AGCCTCCTTC
ATCGTCTTAC CTCAAACCCA AAATCCCCCG GCGAGTGTTT ACGACTATTT CTGTCAGCGG
TTCGATAATA TTTCCGCAGG TGTCTGGCGC GAGCGCTTCA TCCAGGGCAA GGTGCATTGG
CAAGATGGTC AGCCGCTGGA ACTTACCACA GCCTATCGAC CTCAGCAGAA GGTGTACTAT
TACCGCGAGG TCGCCCATGA GGCGCCGCCT CCCTTTAGCG AATCGATTCT GTATCTAGAT
GAGCAGATAG TACTGGCCAA CAAGCCCCAT TTCATGGCTT TGCATCCGGG TGGTGAGGTG
ATCAATCAGT GTTTAATCAA CCGGCTAAGG GAGCGCACGG GCTGTGAGAC GCTGATCGCC
GCCCATCGTC TGGATCGCGC CACCGCGGGC ATAGTTCTGC TGGTCAAGCA GAGTGACAGC
CGCGACGCCT ACCATGGCCT GTTTCGCCAT GGACAGATCA CCAAGGAATA TCAGGCCTTG
GCGCGCCTTA CCCCAGAACT ACTGGCTGAG TATCACGCCG GTAAACTTAG CCTGCCCAGA
CGCTGGACGG TGAAGAATCG CATCGATAAG GGCACACCCA GTTTTACCAT GCGCATCGTC
GACGGCGAGG CCAACAGCCA CTCGGAGATC GCTCTGGTGA GCGTCGAGGG AGAGATTGGT
CGTTTCGAGC TGATGCCGAT CACCGGCAAG ACTCATCAGC TGCGCCTGCA CATGAACAGC
CTGGGGATGC CGATCCTTAA CGATAATTTC TATCCGACTC TATTACCCAG AAGCGCCGAG
GATGTTGCCC AGCCGATGAA GCTGCTGGCG CGTCGTCTCG CCTTCACTGA TCCGGTCACC
GGTCGAAAGC TGGATATCTG CCTGCCGGAA CTGTCTGTTT AG
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| Protein sequence | MAAPSSLGLS VMVRAAQASF IVLPQTQNPP ASVYDYFCQR FDNISAGVWR ERFIQGKVHW
QDGQPLELTT AYRPQQKVYY YREVAHEAPP PFSESILYLD EQIVLANKPH FMALHPGGEV
INQCLINRLR ERTGCETLIA AHRLDRATAG IVLLVKQSDS RDAYHGLFRH GQITKEYQAL
ARLTPELLAE YHAGKLSLPR RWTVKNRIDK GTPSFTMRIV DGEANSHSEI ALVSVEGEIG
RFELMPITGK THQLRLHMNS LGMPILNDNF YPTLLPRSAE DVAQPMKLLA RRLAFTDPVT
GRKLDICLPE LSV
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