| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3341 |
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| Symbol | |
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| ID | 4923096 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3985748 |
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| End bp | 3986728 |
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| Gene Length | 981 bp |
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| Protein Length | 326 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640164953 |
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| Product | diguanylate cyclase with GAF sensor |
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| Protein accession | YP_001095466 |
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| Protein GI | 127514269 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.326656 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGACAG AATCTTTGTA CAGCAGTGAA CGCTTTCTTC TCGATAATCC TATCGATCTC
ATCTCGCTCG ATAAATGGCA GAAAACCGTT AACCTGCTGG CCCACGTGTT TAACGCGCCG
GCCAGCTTCT TGGTGCAATA CACCCCGAAG GGGTTTCAGG TGACCATCGC CAGCAAGCAG
GTCAGCAATC CCTATCCGTC TGGGGTGGTG ATCCCCCCCG ATACCAATAT TTTTTGCCGG
CGCATCGTCG AAACCCAGGC GGCGCTCTAT GTGCCCGACG CCAAGGTAGA TCCTTGCTGG
GACACCAATC CCGAGGTACA AAACGATGGC TTCTCCTCCT ATCTCGGGGT GCCGGTGTTT
TGGCCCGATG GCCGCTGTTT CGGCACCTTC TGTGTGATGG ACTATGCCAA GACAGAGTAT
CAGGACAGCT ATATCGAGCT GATCCACGAA CTCAAGGAGA TCCTTGAGGC GGATCTCGCC
CTGCTGGATA TCTACGGTGA GCTCAAGCAG CTGGCGCATC TGGATGACCT GTGTCATATC
AATAATCGTC GTGGATTTAA TGGGTTAGCC AGACAGCGAA TGAAGCTGGC TCAGCGCAAC
GACAGCCGTC TGGCGATGCT CTATATCGAT GTCGATAACT TTAAGGGGAT CAATGACGGT
CACGGCCACT CGGTGGGCGA CGAGGTACTC AAGTTGCTGG CGGGGATCAT CAAGCAGAGC
GTCAGAGGGT CAGATGTGGT TGGGCGCATA GGCGGCGACG AGTTTGTGGT GCTGCTCATG
TGTCAGAGCG ATGAGGATGT GATTGCCACC GAGACGCGCA TCATGCAGGG GCTGGATAAT
GCCATGCTCG ACAGCCATCT ACCCGAGGTG ACTGTGACCA TAGGCCATAA GATAGTGGAT
CAGGATGCGC GACTGGATAC TCTGCTGGCT CAGGCCGACG AAGATATGCT GCGCCGTAAA
CGTGACAAAC AGGCGTTGTA G
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| Protein sequence | MSTESLYSSE RFLLDNPIDL ISLDKWQKTV NLLAHVFNAP ASFLVQYTPK GFQVTIASKQ
VSNPYPSGVV IPPDTNIFCR RIVETQAALY VPDAKVDPCW DTNPEVQNDG FSSYLGVPVF
WPDGRCFGTF CVMDYAKTEY QDSYIELIHE LKEILEADLA LLDIYGELKQ LAHLDDLCHI
NNRRGFNGLA RQRMKLAQRN DSRLAMLYID VDNFKGINDG HGHSVGDEVL KLLAGIIKQS
VRGSDVVGRI GGDEFVVLLM CQSDEDVIAT ETRIMQGLDN AMLDSHLPEV TVTIGHKIVD
QDARLDTLLA QADEDMLRRK RDKQAL
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