| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3333 |
|---|
| Symbol | |
|---|
| ID | 4923088 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 3977244 |
|---|
| End bp | 3977882 |
|---|
| Gene Length | 639 bp |
|---|
| Protein Length | 212 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640164945 |
|---|
| Product | electron transport protein SCO1/SenC |
|---|
| Protein accession | YP_001095458 |
|---|
| Protein GI | 127514261 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1999] Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACGAG TTAACCAAGG TAAGTTTCAT CTGGCCCTGA GCCTCTGTGT GCTGCTTATC
GGCAGCCTGA TGAGCGCTGC TAGCATGGCG AACATGCCGA TCCTCAAGGG GATTGGTGGC
GATTTTAGCC TGCGCAGCAG CAAGGGGGGT GAGGTTCGTC TGTCGGACTT TCACGACAAG
GTGGTGATGA TGTTCTTCGG CTACACCAAC TGCGCCGACA TCTGCCCGAC CACCATGGCC
CACATCAGCC AGCTGATGCA CCAGTTGCCG AGCGAGACCC GAGACCGCAT TCAGGTGCTC
TTTATCAGCA TCGACAGCGA CTACGACACG CCCAAGCACC TGAACAAATA CCTCAGCTAT
TTCGACCCCA GCTTTATCGG CTTGGTGGAT GAGCGGGAGA AGATAGATGA GGTCGCCGCG
CTGTTTAAGG CCGACTATAC CAAGCTGGCC GAGGAGAAGG TGACCACTGA GTATAAGAAG
CTGAGCCTGG AAGATAGCAA GGCGCCTAAG CGTCAGGGTT ATCTCTATTC CCACACCGCC
AAGATCTTCG TGCTCGATGG CAAACAGCGG GTGCGCGGTT TCTTCTACAC TGGCACCCCC
ATAGACGAGA TGCGTCAACA GATCGAGAGT CTGCTCTAA
|
|---|
| Protein sequence | MTRVNQGKFH LALSLCVLLI GSLMSAASMA NMPILKGIGG DFSLRSSKGG EVRLSDFHDK
VVMMFFGYTN CADICPTTMA HISQLMHQLP SETRDRIQVL FISIDSDYDT PKHLNKYLSY
FDPSFIGLVD EREKIDEVAA LFKADYTKLA EEKVTTEYKK LSLEDSKAPK RQGYLYSHTA
KIFVLDGKQR VRGFFYTGTP IDEMRQQIES LL
|
|---|
| |