| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3329 |
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| Symbol | |
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| ID | 4924039 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3972575 |
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| End bp | 3974506 |
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| Gene Length | 1932 bp |
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| Protein Length | 643 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640164941 |
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| Product | diguanylate cyclase/phosphodiesterase with GAF sensor |
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| Protein accession | YP_001095454 |
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| Protein GI | 127514257 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCCCT ATCAAGACGC TCTCTCATTG CTGGAGCAAG ACCCACTCTT CAGCCAGACT
CAGGTCAACA CGGCCCAGCT TGCGGTGCCG GATGAGATGT TTAACGGCTG GCAGCAAACC
TTAGATCTCC TATCGGAAAT CGTCGACACC CCGGCCATCC TGATCATGCG GGTGACGGAA
AGAGATATCT CTGTCTTCAC CACCAGCCAT CATCCAGACA ATCCCTATAA ACGCCATGAC
ACAGAGAGTC TGGGCCATGG TCTCTACTGC GAGACGGTTA TCAAGCGCCA AGCCGAGCTG
GTCGTGCCCA ACGCCTTAAA AGATAAGGAG TGGGATCGCA ATCCCGATAT CAAATTGGGG
ATGATCGCCT ACTGCGGCCT GCCGCTCACC TGGCCCAACG GCCAGCCCTT CGGCACCCTG
TGTATGCTGG ATAACAAGGA GAGGGACTAC GGCCGCACCT TTCGCCATCT GCTGGCGCGG
TTTCAAAACG CCATCAATGC CAATCTCGCC AGCCTGTATC AAAGCGCCAA ACTCTTCCAT
CTCAACCAAG TTTTAGAGAC CAAGGTGCAG CAACGTACCC TGGAACTCAC CAGTCTCAAC
AAGAAGCTAT TGAGCGAGAT CGAACAACGT ACCGTTATCG AGAATTCACT GCAATTTCAT
AAGGATCACG ACCCATTGAC CGGCCTTGCC AATCGGCTGG GTTTCGTAAA TCAGCTCTCC
CAGCAACTCA GCCAACCCGA TGAGCTGTCT ACCTATGTGA TCTATTTTGG CCTGCGTAAC
TTCAAGTCGA TCAACGAGAG CTATGGTTAC GTGGTCGGCG ACAAGGTGCT GCAGCTCTTT
AGCCAGCGCA TCAAGCGCAT CCTGGATAAG GATACTCTGT TTGCCCGCAT CGCCGGCGCC
GAGTTTGTCA TCGCCCACAG GGGCAAGAAT CCCCTGGAGC TTCCCCTGAT CGACAGCATA
ATACAGACCG CCAATATTCC CTTCGCCCTG GCAGAGTTCA GCATCAATAT TCCCTGCTGC
ATAGGGGTTG CTGTCGCACC GACGGACGCC CAGGAGGCCT CTGAGTTGAT GCAGAAAGCC
GGCGCCGCCA TGAGCATCAG TAAGGCCGAG GCCACACCCT ACAGCTTCTT CAACAAGCAC
ACTCAGACCA ATATCGAGCG CCGCTGCCTA TTGGAGTCAC ACCTGGTGGA CGCCCTCAAA
CATCAGGAAC TGAGCCTACA TTATCAGCCG CTGTTTAGCC TGCAACACAA GCGGGTTATC
GGTGCCGAGG CCCTGCTCCG CTGGCACAGC CCGCAGCTCG GCGATGTACC CCCGGATCAA
TTTATTAGCC TAGCCGAGCA CAATGGTCAG ATCATCGCCA TAGGTAACTT CGTGCTGCAT
ACCGCTATAG AACAGGCCGC CAAGTGGCGT AGCCAAGATC CCAGCAGGCC GTTTAGGGTG
GCAATCAACA TCTCGCCGCT ACAGTTTCGC GATACCGATT TTGCCGACTA TATTGCCAAC
CTCTTGAGTC TCTACCGCCT GCCGGCCTCC TCCCTGGAAC TGGAGATCAC CGAAGGCGTA
CTGCTGCAAG ATGAGCAGCT GGCGCAGCAT ATCATTGGCC AGTTGCAGGC CCTGGGGGTA
AGGATCTCCC TCGACGATTT CGGCACCGGC TACTCCTCCC TTAGTTACCT GCAAAAATAC
TCCTTCGACA CCCTGAAGAT AGATCGCTGC TTCATCACGA ATCTGGAGAA GAACGAGCAG
GACAGGGAGC TGACCCGGGC CATCATCGCC ATGGGCAAGA AGCTGACACT CAATGTGATC
GCCGAAGGAG TGGAGACCCA GGCGCAGGAT GCCTTTATCC GCCAGGAGGA GTGCGACTTC
GGACAGGGTT ATCTGTATGG CAGGCCTGTG GATGCGCAGA CCTTCGAACG CGACTATCTG
AGCTCAGACT AA
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| Protein sequence | MKPYQDALSL LEQDPLFSQT QVNTAQLAVP DEMFNGWQQT LDLLSEIVDT PAILIMRVTE
RDISVFTTSH HPDNPYKRHD TESLGHGLYC ETVIKRQAEL VVPNALKDKE WDRNPDIKLG
MIAYCGLPLT WPNGQPFGTL CMLDNKERDY GRTFRHLLAR FQNAINANLA SLYQSAKLFH
LNQVLETKVQ QRTLELTSLN KKLLSEIEQR TVIENSLQFH KDHDPLTGLA NRLGFVNQLS
QQLSQPDELS TYVIYFGLRN FKSINESYGY VVGDKVLQLF SQRIKRILDK DTLFARIAGA
EFVIAHRGKN PLELPLIDSI IQTANIPFAL AEFSINIPCC IGVAVAPTDA QEASELMQKA
GAAMSISKAE ATPYSFFNKH TQTNIERRCL LESHLVDALK HQELSLHYQP LFSLQHKRVI
GAEALLRWHS PQLGDVPPDQ FISLAEHNGQ IIAIGNFVLH TAIEQAAKWR SQDPSRPFRV
AINISPLQFR DTDFADYIAN LLSLYRLPAS SLELEITEGV LLQDEQLAQH IIGQLQALGV
RISLDDFGTG YSSLSYLQKY SFDTLKIDRC FITNLEKNEQ DRELTRAIIA MGKKLTLNVI
AEGVETQAQD AFIRQEECDF GQGYLYGRPV DAQTFERDYL SSD
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